Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 MED16-201ENST00000269814 1199 ntTSL 5 BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 KRT8P3-201ENST00000519669 1449 ntBASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 PPOX-214ENST00000535223 664 ntTSL 3 BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 MTDHP3-201ENST00000594186 672 ntBASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 GOLGA6L5P-202ENST00000515341 1828 ntBASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 CLDN5-201ENST00000403084 2357 ntBASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.13
COL17A1Q9UMD9 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 RPS2P1-201ENST00000434010 821 ntBASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 AC092364.2-202ENST00000597012 1073 ntBASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
COL17A1Q9UMD9 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 AC092910.1-201ENST00000482027 1129 ntBASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 AC011840.4-201ENST00000578471 627 ntBASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 RCN1P2-201ENST00000398357 915 ntBASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC28.34■■■□□ 2.13
COL17A1Q9UMD9 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 KRT8P7-201ENST00000533003 1432 ntBASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 AC211486.1-202ENST00000416371 468 ntBASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 THAP5-204ENST00000438865 868 ntTSL 2 BASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 AC211476.1-201ENST00000503899 468 ntBASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
COL17A1Q9UMD9 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 AP005212.1-201ENST00000581547 1997 ntBASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 GAS2L1P1-201ENST00000420145 1480 ntBASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 COX20P2-201ENST00000452636 358 ntBASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 HS6ST1P1-201ENST00000481504 1234 ntBASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 AC005336.2-201ENST00000593183 939 ntBASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC28.32■■■□□ 2.12
COL17A1Q9UMD9 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 AL137060.1-201ENST00000618151 2648 ntBASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms