Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 KRT18P23-201ENST00000435622 1283 ntBASIC20.04■□□□□ 0.8
SIX4Q9UIU6 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 AC010331.1-201ENST00000611423 582 ntBASIC20.04■□□□□ 0.8
SIX4Q9UIU6 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 AC087289.5-201ENST00000586076 3175 ntBASIC20.03■□□□□ 0.8
SIX4Q9UIU6 AL031598.1-201ENST00000561511 1773 ntBASIC20.03■□□□□ 0.8
SIX4Q9UIU6 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 AL499627.1-201ENST00000569373 2188 ntBASIC20.03■□□□□ 0.8
SIX4Q9UIU6 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 MIR1224-201ENST00000408193 85 ntBASIC20.03■□□□□ 0.8
SIX4Q9UIU6 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 AC022616.7-201ENST00000525383 220 ntBASIC20.03■□□□□ 0.8
SIX4Q9UIU6 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX4Q9UIU6 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 KRT18P38-201ENST00000449496 1282 ntBASIC20.02■□□□□ 0.8
SIX4Q9UIU6 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 KRT18P41-201ENST00000518924 1277 ntBASIC20.02■□□□□ 0.8
SIX4Q9UIU6 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.02■□□□□ 0.8
SIX4Q9UIU6 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
SIX4Q9UIU6 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SIX4Q9UIU6 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
SIX4Q9UIU6 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SIX4Q9UIU6 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SIX4Q9UIU6 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SIX4Q9UIU6 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
SIX4Q9UIU6 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SIX4Q9UIU6 KRT8P7-201ENST00000533003 1432 ntBASIC20.02■□□□□ 0.79
SIX4Q9UIU6 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 FAM8A6P-201ENST00000407496 1135 ntBASIC20.01■□□□□ 0.79
SIX4Q9UIU6 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX4Q9UIU6 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms