Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 MYC-208ENST00000641036 567 ntBASIC18.71■□□□□ 0.59
TREX1Q9NSU2 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TREX1Q9NSU2 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 MIR4785-201ENST00000585005 73 ntBASIC18.7■□□□□ 0.58
TREX1Q9NSU2 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.7■□□□□ 0.58
TREX1Q9NSU2 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 MIR564-202ENST00000385049 94 ntBASIC18.69■□□□□ 0.58
TREX1Q9NSU2 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 MIR4674-201ENST00000582457 87 ntBASIC18.69■□□□□ 0.58
TREX1Q9NSU2 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 AC079598.2-202ENST00000546624 1451 ntBASIC18.69■□□□□ 0.58
TREX1Q9NSU2 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 AL354751.1-201ENST00000412768 1863 ntBASIC18.69■□□□□ 0.58
TREX1Q9NSU2 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TREX1Q9NSU2 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 UNC93B2-201ENST00000285383 730 ntBASIC18.68■□□□□ 0.58
TREX1Q9NSU2 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 MCCD1P1-208ENST00000445732 328 ntBASIC18.68■□□□□ 0.58
TREX1Q9NSU2 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 AL023803.3-201ENST00000615559 522 ntBASIC18.68■□□□□ 0.58
TREX1Q9NSU2 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms