Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 AC093827.2-201ENST00000512654 315 ntBASIC19.39■□□□□ 0.69
PCDH9Q9HC56 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH9Q9HC56 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.38■□□□□ 0.69
PCDH9Q9HC56 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH9Q9HC56 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 AC126763.1-201ENST00000552015 2118 ntBASIC19.37■□□□□ 0.69
PCDH9Q9HC56 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 TSPY7P-201ENST00000431358 1114 ntBASIC19.37■□□□□ 0.69
PCDH9Q9HC56 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 NUDT16P1-203ENST00000513809 620 ntBASIC19.37■□□□□ 0.69
PCDH9Q9HC56 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH9Q9HC56 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 AC004951.3-201ENST00000418645 1148 ntBASIC19.36■□□□□ 0.69
PCDH9Q9HC56 AL355355.2-201ENST00000442321 338 ntBASIC19.36■□□□□ 0.69
PCDH9Q9HC56 SNORA78-201ENST00000459373 127 ntBASIC19.36■□□□□ 0.69
PCDH9Q9HC56 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 AC026471.5-201ENST00000615068 467 ntBASIC19.36■□□□□ 0.69
PCDH9Q9HC56 MIR6786-201ENST00000616843 113 ntBASIC19.36■□□□□ 0.69
PCDH9Q9HC56 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms