Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
RNF39Q9H2S5 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.79■□□□□ 0.92
RNF39Q9H2S5 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
RNF39Q9H2S5 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
RNF39Q9H2S5 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.79■□□□□ 0.92
RNF39Q9H2S5 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.79■□□□□ 0.92
RNF39Q9H2S5 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF39Q9H2S5 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF39Q9H2S5 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.79■□□□□ 0.92
RNF39Q9H2S5 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 DSCR10-201ENST00000432141 860 ntTSL 3 BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 MTND2P2-201ENST00000434633 945 ntBASIC20.78■□□□□ 0.92
RNF39Q9H2S5 AL445072.1-201ENST00000438994 639 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF39Q9H2S5 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 IFT74-202ENST00000429045 1462 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 OPRM1-210ENST00000452687 1352 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 ETFRF1-201ENST00000381356 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 AC117947.1-201ENST00000427448 529 ntBASIC20.77■□□□□ 0.92
RNF39Q9H2S5 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 BX664615.1-201ENST00000443558 458 ntBASIC20.77■□□□□ 0.92
RNF39Q9H2S5 CA15P1-201ENST00000481698 905 ntBASIC20.77■□□□□ 0.92
RNF39Q9H2S5 RN7SKP157-201ENST00000516174 282 ntBASIC20.77■□□□□ 0.92
RNF39Q9H2S5 AP002981.1-201ENST00000517692 975 ntBASIC20.77■□□□□ 0.92
RNF39Q9H2S5 AP003041.3-201ENST00000527151 707 ntBASIC20.77■□□□□ 0.92
RNF39Q9H2S5 E2F3P1-201ENST00000589887 1230 ntBASIC20.77■□□□□ 0.92
RNF39Q9H2S5 AL023806.2-201ENST00000603042 263 ntBASIC20.77■□□□□ 0.92
RNF39Q9H2S5 AC139887.4-201ENST00000607877 719 ntBASIC20.77■□□□□ 0.92
RNF39Q9H2S5 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
RNF39Q9H2S5 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.77■□□□□ 0.91
RNF39Q9H2S5 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.77■□□□□ 0.91
RNF39Q9H2S5 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 AC098862.1-201ENST00000504991 413 ntBASIC20.76■□□□□ 0.91
RNF39Q9H2S5 AC009630.2-201ENST00000524133 570 ntTSL 5 BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 AC009630.2-202ENST00000578500 884 ntTSL 3 BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 AC092184.1-201ENST00000625042 715 ntBASIC20.76■□□□□ 0.91
RNF39Q9H2S5 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 TREX1-205ENST00000625293 1783 ntBASIC20.76■□□□□ 0.91
RNF39Q9H2S5 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF39Q9H2S5 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms