Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 ESPNP-201ENST00000270691 2015 ntBASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 MTMR9LP-203ENST00000426597 1545 ntBASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 AC026271.2-201ENST00000428091 497 ntBASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 SLC25A6P5-201ENST00000435663 894 ntBASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 AC080038.1-201ENST00000611274 1154 ntBASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 AC073111.5-205ENST00000641717 521 ntBASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 AC068587.9-201ENST00000641814 219 ntBASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC28BQ9BUN5 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 MYC-208ENST00000641036 567 ntBASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC28BQ9BUN5 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 HCG11-201ENST00000411553 5696 ntBASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms