Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 Six3os1_6.1-201ENST00000620790 196 ntBASIC16.36■□□□□ 0.21
NKX3-1Q99801 TMEM191A-211ENST00000637163 1067 ntBASIC16.36■□□□□ 0.21
NKX3-1Q99801 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.36■□□□□ 0.21
NKX3-1Q99801 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 AC012313.1-201ENST00000593393 3059 ntBASIC16.35■□□□□ 0.21
NKX3-1Q99801 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 AC083906.6-201ENST00000641366 219 ntBASIC16.35■□□□□ 0.21
NKX3-1Q99801 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NKX3-1Q99801 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.35■□□□□ 0.21
NKX3-1Q99801 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
NKX3-1Q99801 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
NKX3-1Q99801 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.34■□□□□ 0.21
NKX3-1Q99801 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.34■□□□□ 0.21
NKX3-1Q99801 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC16.34■□□□□ 0.21
NKX3-1Q99801 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC16.34■□□□□ 0.21
NKX3-1Q99801 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC16.34■□□□□ 0.21
NKX3-1Q99801 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.34■□□□□ 0.21
NKX3-1Q99801 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC16.34■□□□□ 0.21
NKX3-1Q99801 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC16.34■□□□□ 0.21
NKX3-1Q99801 AL121829.2-201ENST00000620908 328 ntBASIC16.34■□□□□ 0.21
NKX3-1Q99801 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.34■□□□□ 0.21
NKX3-1Q99801 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NKX3-1Q99801 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
NKX3-1Q99801 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
NKX3-1Q99801 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
NKX3-1Q99801 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
NKX3-1Q99801 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
NKX3-1Q99801 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
NKX3-1Q99801 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms