Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 RNF152P1-201ENST00000397754 604 ntBASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 TSPY21P-201ENST00000433481 731 ntBASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 AC092647.4-201ENST00000457211 535 ntBASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 YBX1P2-201ENST00000489612 999 ntBASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 AC140113.3-201ENST00000605663 199 ntBASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 TREX1-205ENST00000625293 1783 ntBASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
CLIP3Q96DZ5 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 AC063952.2-201ENST00000498792 1227 ntBASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 AL031432.5-201ENST00000641059 760 ntBASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP3Q96DZ5 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 BCL2-203ENST00000589955 5011 ntBASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 TSPY23P-201ENST00000440136 739 ntBASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms