Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.02■□□□□ 0.63
TTC28Q96AY4 PLK5-205ENST00000642079 1969 ntBASIC19.02■□□□□ 0.63
TTC28Q96AY4 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.01■□□□□ 0.63
TTC28Q96AY4 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 MKNK2P1-201ENST00000437526 628 ntBASIC19.01■□□□□ 0.63
TTC28Q96AY4 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.01■□□□□ 0.63
TTC28Q96AY4 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
TTC28Q96AY4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
TTC28Q96AY4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
TTC28Q96AY4 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.01■□□□□ 0.63
TTC28Q96AY4 TP73-AS1-210ENST00000637775 1455 ntBASIC19.01■□□□□ 0.63
TTC28Q96AY4 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.01■□□□□ 0.63
TTC28Q96AY4 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.01■□□□□ 0.63
TTC28Q96AY4 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.01■□□□□ 0.63
TTC28Q96AY4 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.01■□□□□ 0.63
TTC28Q96AY4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TTC28Q96AY4 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
TTC28Q96AY4 ELL2P1-201ENST00000413990 1906 ntBASIC19.01■□□□□ 0.63
TTC28Q96AY4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19■□□□□ 0.63
TTC28Q96AY4 AC002472.2-201ENST00000442739 958 ntBASIC19■□□□□ 0.63
TTC28Q96AY4 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TTC28Q96AY4 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
TTC28Q96AY4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TTC28Q96AY4 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TTC28Q96AY4 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
TTC28Q96AY4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19■□□□□ 0.63
TTC28Q96AY4 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19■□□□□ 0.63
TTC28Q96AY4 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19■□□□□ 0.63
TTC28Q96AY4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19■□□□□ 0.63
TTC28Q96AY4 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TTC28Q96AY4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19■□□□□ 0.63
TTC28Q96AY4 AC121338.2-201ENST00000622535 1744 ntBASIC19■□□□□ 0.63
TTC28Q96AY4 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19■□□□□ 0.63
TTC28Q96AY4 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TTC28Q96AY4 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TTC28Q96AY4 AL356309.3-201ENST00000624132 1934 ntBASIC18.99■□□□□ 0.63
TTC28Q96AY4 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TTC28Q96AY4 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
TTC28Q96AY4 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.99■□□□□ 0.63
TTC28Q96AY4 MRPL20P1-201ENST00000400819 433 ntBASIC18.99■□□□□ 0.63
TTC28Q96AY4 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TTC28Q96AY4 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.99■□□□□ 0.63
TTC28Q96AY4 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TTC28Q96AY4 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TTC28Q96AY4 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TTC28Q96AY4 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TTC28Q96AY4 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.99■□□□□ 0.63
TTC28Q96AY4 FP700111.2-201ENST00000619190 1892 ntBASIC18.99■□□□□ 0.63
TTC28Q96AY4 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TTC28Q96AY4 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.99■□□□□ 0.63
TTC28Q96AY4 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TTC28Q96AY4 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TTC28Q96AY4 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.99■□□□□ 0.63
TTC28Q96AY4 AL513190.1-201ENST00000621254 727 ntBASIC18.99■□□□□ 0.63
TTC28Q96AY4 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TTC28Q96AY4 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TTC28Q96AY4 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TTC28Q96AY4 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.98■□□□□ 0.63
TTC28Q96AY4 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.98■□□□□ 0.63
TTC28Q96AY4 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TTC28Q96AY4 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.98■□□□□ 0.63
TTC28Q96AY4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.98■□□□□ 0.63
TTC28Q96AY4 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
TTC28Q96AY4 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TTC28Q96AY4 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
TTC28Q96AY4 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TTC28Q96AY4 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TTC28Q96AY4 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
TTC28Q96AY4 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.98■□□□□ 0.63
TTC28Q96AY4 AL139288.1-201ENST00000623748 933 ntBASIC18.98■□□□□ 0.63
TTC28Q96AY4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TTC28Q96AY4 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.98■□□□□ 0.63
TTC28Q96AY4 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.98■□□□□ 0.63
TTC28Q96AY4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TTC28Q96AY4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TTC28Q96AY4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TTC28Q96AY4 EDF1-203ENST00000371649 790 ntTSL 2 BASIC18.97■□□□□ 0.63
TTC28Q96AY4 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.97■□□□□ 0.63
TTC28Q96AY4 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.97■□□□□ 0.63
TTC28Q96AY4 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC18.97■□□□□ 0.63
TTC28Q96AY4 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TTC28Q96AY4 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TTC28Q96AY4 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TTC28Q96AY4 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC18.97■□□□□ 0.63
TTC28Q96AY4 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TTC28Q96AY4 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.97■□□□□ 0.63
TTC28Q96AY4 AC069262.1-201ENST00000539058 672 ntBASIC18.97■□□□□ 0.63
TTC28Q96AY4 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms