Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 KATNBL1P6-202ENST00000562413 1466 ntBASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
NKX2-3Q8TAU0 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 AC036111.1-201ENST00000533973 1582 ntBASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 AC140113.3-201ENST00000605663 199 ntBASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 AL499627.1-201ENST00000569373 2188 ntBASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 SNAI3-AS1-205ENST00000568633 2096 ntBASIC22.18■■□□□ 1.14
NKX2-3Q8TAU0 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 GPALPP1-207ENST00000611650 899 ntBASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 IRF5-214ENST00000613821 595 ntTSL 5 BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 AC018445.3-201ENST00000624177 1945 ntBASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NKX2-3Q8TAU0 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 AC093503.3-201ENST00000624917 2352 ntBASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
NKX2-3Q8TAU0 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 HEIH-201ENST00000623091 1652 ntBASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 GXYLT1P6-201ENST00000456472 1187 ntBASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 AL359075.1-203ENST00000462729 1002 ntBASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 AL136038.3-201ENST00000561909 1096 ntBASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
NKX2-3Q8TAU0 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms