Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 PRSS44-201ENST00000515154 1146 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 AL353719.1-201ENST00000566847 864 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 AL160286.2-201ENST00000567150 934 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 AC093458.2-201ENST00000623150 629 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 CLN6-214ENST00000636314 442 ntTSL 3 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 AL845331.1-201ENST00000424978 1190 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 AL136038.3-201ENST00000561909 1096 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 AC116562.4-202ENST00000641738 218 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 AL671277.2-201ENST00000458060 996 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 AP000523.1-201ENST00000398242 1049 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 CKBP1-201ENST00000565489 1086 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 AP002383.4-201ENST00000442518 975 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 CR769767.2-201ENST00000622735 460 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 AC141257.4-201ENST00000634557 245 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 AC136944.6-201ENST00000634818 245 ntBASIC5.78□□□□□ -1.48
SYNE1Q8NF91 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms