Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 GUSBP12-201ENST00000513727 720 ntBASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 REXO1L6P-202ENST00000619970 1078 ntBASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 GABARAPL3-202ENST00000624044 1851 ntBASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 MIR574-201ENST00000385209 96 ntBASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 RN7SL606P-201ENST00000472779 293 ntBASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 AF238378.1-201ENST00000526806 358 ntBASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 AC064862.7-201ENST00000604520 867 ntBASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SLC44A3Q8N4M1 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 MIR564-202ENST00000385049 94 ntBASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 IGHGP-201ENST00000390555 1178 ntBASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 PMS2P1-201ENST00000431037 1228 ntBASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 AL592071.1-201ENST00000611956 408 ntBASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SLC44A3Q8N4M1 NSUN5P1-202ENST00000421140 1535 ntBASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 NSUN5P2-203ENST00000457352 1529 ntBASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 RNA5SP419-201ENST00000515908 135 ntBASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 AP001005.1-201ENST00000571755 1248 ntBASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 IL9RP2-201ENST00000423948 1312 ntBASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms