Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 TOB2P1-201ENST00000469761 992 ntBASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPAS3Q8IXF0 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
NPAS3Q8IXF0 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
NPAS3Q8IXF0 TREX1-205ENST00000625293 1783 ntBASIC19.39■□□□□ 0.7
NPAS3Q8IXF0 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.39■□□□□ 0.7
NPAS3Q8IXF0 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
NPAS3Q8IXF0 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 PVRIG2P-201ENST00000435460 978 ntBASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 EMBP1-201ENST00000458200 901 ntBASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPAS3Q8IXF0 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 MIR564-202ENST00000385049 94 ntBASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 AC012615.1-201ENST00000565797 1299 ntBASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPAS3Q8IXF0 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 AP000347.1-202ENST00000435868 847 ntBASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 AC091304.2-201ENST00000564639 760 ntBASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 AC005332.3-201ENST00000589904 676 ntBASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 AL390719.2-201ENST00000606993 987 ntBASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 AL121772.3-201ENST00000610840 674 ntBASIC19.37■□□□□ 0.69
NPAS3Q8IXF0 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms