Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.93■□□□□ 0.78
USP41Q3LFD5 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.93■□□□□ 0.78
USP41Q3LFD5 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP41Q3LFD5 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP41Q3LFD5 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP41Q3LFD5 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP41Q3LFD5 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP41Q3LFD5 AL391807.1-203ENST00000604392 2365 ntBASIC19.93■□□□□ 0.78
USP41Q3LFD5 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP41Q3LFD5 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP41Q3LFD5 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP41Q3LFD5 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.93■□□□□ 0.78
USP41Q3LFD5 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP41Q3LFD5 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP41Q3LFD5 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP41Q3LFD5 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.92■□□□□ 0.78
USP41Q3LFD5 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP41Q3LFD5 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.92■□□□□ 0.78
USP41Q3LFD5 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP41Q3LFD5 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.92■□□□□ 0.78
USP41Q3LFD5 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP41Q3LFD5 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.92■□□□□ 0.78
USP41Q3LFD5 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.92■□□□□ 0.78
USP41Q3LFD5 AC104390.1-201ENST00000555663 520 ntBASIC19.92■□□□□ 0.78
USP41Q3LFD5 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.92■□□□□ 0.78
USP41Q3LFD5 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP41Q3LFD5 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP41Q3LFD5 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
USP41Q3LFD5 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP41Q3LFD5 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP41Q3LFD5 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.92■□□□□ 0.78
USP41Q3LFD5 AC016734.2-201ENST00000624325 1377 ntBASIC19.92■□□□□ 0.78
USP41Q3LFD5 KRT8P32-201ENST00000512863 1461 ntBASIC19.92■□□□□ 0.78
USP41Q3LFD5 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.92■□□□□ 0.78
USP41Q3LFD5 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.92■□□□□ 0.78
USP41Q3LFD5 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.92■□□□□ 0.78
USP41Q3LFD5 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP41Q3LFD5 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP41Q3LFD5 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP41Q3LFD5 IRX1P1-201ENST00000438849 1838 ntBASIC19.91■□□□□ 0.78
USP41Q3LFD5 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP41Q3LFD5 MIR662-201ENST00000384847 95 ntBASIC19.91■□□□□ 0.78
USP41Q3LFD5 MIR564-202ENST00000385049 94 ntBASIC19.91■□□□□ 0.78
USP41Q3LFD5 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP41Q3LFD5 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 AC092329.2-201ENST00000598402 547 ntBASIC19.91■□□□□ 0.78
USP41Q3LFD5 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP41Q3LFD5 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP41Q3LFD5 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP41Q3LFD5 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP41Q3LFD5 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP41Q3LFD5 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.91■□□□□ 0.78
USP41Q3LFD5 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP41Q3LFD5 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP41Q3LFD5 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP41Q3LFD5 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP41Q3LFD5 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.9■□□□□ 0.78
USP41Q3LFD5 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.9■□□□□ 0.78
USP41Q3LFD5 AC010240.3-201ENST00000607688 395 ntBASIC19.9■□□□□ 0.78
USP41Q3LFD5 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.9■□□□□ 0.78
USP41Q3LFD5 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
USP41Q3LFD5 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP41Q3LFD5 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
USP41Q3LFD5 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP41Q3LFD5 AC093525.10-201ENST00000625130 1569 ntBASIC19.9■□□□□ 0.78
USP41Q3LFD5 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
USP41Q3LFD5 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP41Q3LFD5 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP41Q3LFD5 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
USP41Q3LFD5 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.9■□□□□ 0.78
USP41Q3LFD5 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
USP41Q3LFD5 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP41Q3LFD5 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP41Q3LFD5 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
USP41Q3LFD5 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.78
USP41Q3LFD5 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
USP41Q3LFD5 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP41Q3LFD5 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP41Q3LFD5 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP41Q3LFD5 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP41Q3LFD5 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP41Q3LFD5 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP41Q3LFD5 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP41Q3LFD5 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USP41Q3LFD5 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP41Q3LFD5 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
USP41Q3LFD5 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP41Q3LFD5 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms