Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF4P78317 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 HEIH-201ENST00000623091 1652 ntBASIC17.36■□□□□ 0.37
RNF4P78317 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF4P78317 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF4P78317 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
RNF4P78317 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF4P78317 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF4P78317 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
RNF4P78317 AK4P3-201ENST00000418260 669 ntBASIC17.35■□□□□ 0.37
RNF4P78317 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.35■□□□□ 0.37
RNF4P78317 YBX1P2-201ENST00000489612 999 ntBASIC17.35■□□□□ 0.37
RNF4P78317 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF4P78317 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
RNF4P78317 AC140113.3-201ENST00000605663 199 ntBASIC17.35■□□□□ 0.37
RNF4P78317 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF4P78317 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
RNF4P78317 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF4P78317 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
RNF4P78317 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF4P78317 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF4P78317 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF4P78317 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF4P78317 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF4P78317 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
RNF4P78317 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF4P78317 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF4P78317 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
RNF4P78317 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
RNF4P78317 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF4P78317 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
RNF4P78317 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
RNF4P78317 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
RNF4P78317 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
RNF4P78317 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.34■□□□□ 0.37
RNF4P78317 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
RNF4P78317 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.34■□□□□ 0.37
RNF4P78317 DUX4L26-201ENST00000489078 1255 ntBASIC17.34■□□□□ 0.37
RNF4P78317 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.34■□□□□ 0.37
RNF4P78317 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 AL049597.2-201ENST00000565575 961 ntBASIC17.34■□□□□ 0.37
RNF4P78317 AL023973.1-201ENST00000624619 620 ntBASIC17.34■□□□□ 0.37
RNF4P78317 AC083906.6-201ENST00000641366 219 ntBASIC17.34■□□□□ 0.37
RNF4P78317 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
RNF4P78317 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF4P78317 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RNF4P78317 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RNF4P78317 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RNF4P78317 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
RNF4P78317 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RNF4P78317 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.33■□□□□ 0.37
RNF4P78317 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RNF4P78317 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.33■□□□□ 0.37
RNF4P78317 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RNF4P78317 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RNF4P78317 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF4P78317 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RNF4P78317 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
RNF4P78317 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.33■□□□□ 0.36
RNF4P78317 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF4P78317 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.33■□□□□ 0.36
RNF4P78317 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.33■□□□□ 0.36
RNF4P78317 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RNF4P78317 AC011558.1-201ENST00000623459 338 ntBASIC17.33■□□□□ 0.36
RNF4P78317 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF4P78317 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RNF4P78317 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.33■□□□□ 0.36
RNF4P78317 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.33■□□□□ 0.36
RNF4P78317 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
RNF4P78317 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF4P78317 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF4P78317 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF4P78317 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF4P78317 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
RNF4P78317 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
RNF4P78317 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
RNF4P78317 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.32■□□□□ 0.36
RNF4P78317 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
RNF4P78317 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
RNF4P78317 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
RNF4P78317 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms