Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH12P55289 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CDH12P55289 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CDH12P55289 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 AC068880.1-201ENST00000507289 2297 ntBASIC17.49■□□□□ 0.39
CDH12P55289 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.49■□□□□ 0.39
CDH12P55289 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.49■□□□□ 0.39
CDH12P55289 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 C1QL1P1-201ENST00000568105 661 ntBASIC17.49■□□□□ 0.39
CDH12P55289 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.49■□□□□ 0.39
CDH12P55289 AC004264.1-201ENST00000608354 794 ntBASIC17.49■□□□□ 0.39
CDH12P55289 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.49■□□□□ 0.39
CDH12P55289 HLA-A-209ENST00000638375 975 ntBASIC17.49■□□□□ 0.39
CDH12P55289 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.49■□□□□ 0.39
CDH12P55289 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CDH12P55289 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.49■□□□□ 0.39
CDH12P55289 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 ABALON-201ENST00000629058 1903 ntBASIC17.49■□□□□ 0.39
CDH12P55289 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH12P55289 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.48■□□□□ 0.39
CDH12P55289 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CDH12P55289 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CDH12P55289 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH12P55289 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH12P55289 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH12P55289 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.48■□□□□ 0.39
CDH12P55289 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.48■□□□□ 0.39
CDH12P55289 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH12P55289 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH12P55289 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH12P55289 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.48■□□□□ 0.39
CDH12P55289 KRT18P6-201ENST00000555540 1265 ntBASIC17.48■□□□□ 0.39
CDH12P55289 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.48■□□□□ 0.39
CDH12P55289 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.48■□□□□ 0.39
CDH12P55289 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CDH12P55289 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH12P55289 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH12P55289 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDH12P55289 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.48■□□□□ 0.39
CDH12P55289 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CDH12P55289 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.48■□□□□ 0.39
CDH12P55289 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH12P55289 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDH12P55289 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.48■□□□□ 0.39
CDH12P55289 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CDH12P55289 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.48■□□□□ 0.39
CDH12P55289 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.47■□□□□ 0.39
CDH12P55289 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CDH12P55289 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CDH12P55289 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.47■□□□□ 0.39
CDH12P55289 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH12P55289 TSPY21P-201ENST00000433481 731 ntBASIC17.47■□□□□ 0.39
CDH12P55289 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.47■□□□□ 0.39
CDH12P55289 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.47■□□□□ 0.39
CDH12P55289 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH12P55289 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.47■□□□□ 0.39
CDH12P55289 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.47■□□□□ 0.39
CDH12P55289 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.47■□□□□ 0.39
CDH12P55289 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CDH12P55289 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CDH12P55289 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH12P55289 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH12P55289 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH12P55289 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH12P55289 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH12P55289 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms