Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.61■□□□□ 0.89
CLCN3P51790 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.61■□□□□ 0.89
CLCN3P51790 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
CLCN3P51790 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLCN3P51790 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLCN3P51790 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLCN3P51790 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.6■□□□□ 0.89
CLCN3P51790 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.6■□□□□ 0.89
CLCN3P51790 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.6■□□□□ 0.89
CLCN3P51790 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.6■□□□□ 0.89
CLCN3P51790 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.6■□□□□ 0.89
CLCN3P51790 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.6■□□□□ 0.89
CLCN3P51790 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.6■□□□□ 0.89
CLCN3P51790 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CLCN3P51790 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CLCN3P51790 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CLCN3P51790 HOXB1-202ENST00000577092 1414 ntBASIC20.6■□□□□ 0.89
CLCN3P51790 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLCN3P51790 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CLCN3P51790 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CLCN3P51790 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CLCN3P51790 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLCN3P51790 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.59■□□□□ 0.89
CLCN3P51790 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.59■□□□□ 0.89
CLCN3P51790 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLCN3P51790 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CLCN3P51790 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
CLCN3P51790 AC006333.2-201ENST00000607957 2099 ntBASIC20.59■□□□□ 0.89
CLCN3P51790 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CLCN3P51790 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CLCN3P51790 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.59■□□□□ 0.89
CLCN3P51790 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLCN3P51790 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.59■□□□□ 0.89
CLCN3P51790 AL645929.1-201ENST00000420084 975 ntBASIC20.59■□□□□ 0.89
CLCN3P51790 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.59■□□□□ 0.89
CLCN3P51790 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.59■□□□□ 0.89
CLCN3P51790 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.59■□□□□ 0.89
CLCN3P51790 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.59■□□□□ 0.89
CLCN3P51790 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.59■□□□□ 0.89
CLCN3P51790 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.59■□□□□ 0.89
CLCN3P51790 AC010240.3-201ENST00000607688 395 ntBASIC20.59■□□□□ 0.89
CLCN3P51790 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CLCN3P51790 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLCN3P51790 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLCN3P51790 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLCN3P51790 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.59■□□□□ 0.89
CLCN3P51790 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CLCN3P51790 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.59■□□□□ 0.89
CLCN3P51790 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CLCN3P51790 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CLCN3P51790 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLCN3P51790 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLCN3P51790 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLCN3P51790 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CLCN3P51790 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLCN3P51790 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CLCN3P51790 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLCN3P51790 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLCN3P51790 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.58■□□□□ 0.89
CLCN3P51790 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLCN3P51790 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLCN3P51790 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.58■□□□□ 0.89
CLCN3P51790 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.58■□□□□ 0.89
CLCN3P51790 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CLCN3P51790 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.58■□□□□ 0.89
CLCN3P51790 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.58■□□□□ 0.89
CLCN3P51790 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.58■□□□□ 0.89
CLCN3P51790 AC104390.1-201ENST00000555663 520 ntBASIC20.58■□□□□ 0.89
CLCN3P51790 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CLCN3P51790 AC069148.1-201ENST00000608741 768 ntBASIC20.58■□□□□ 0.89
CLCN3P51790 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.58■□□□□ 0.89
CLCN3P51790 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CLCN3P51790 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CLCN3P51790 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
CLCN3P51790 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CLCN3P51790 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CLCN3P51790 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CLCN3P51790 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
CLCN3P51790 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.57■□□□□ 0.88
CLCN3P51790 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.57■□□□□ 0.88
CLCN3P51790 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLCN3P51790 AC034236.2-201ENST00000606662 1610 ntBASIC20.57■□□□□ 0.88
CLCN3P51790 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLCN3P51790 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLCN3P51790 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.57■□□□□ 0.88
CLCN3P51790 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.57■□□□□ 0.88
CLCN3P51790 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CLCN3P51790 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLCN3P51790 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLCN3P51790 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CLCN3P51790 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.57■□□□□ 0.88
CLCN3P51790 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLCN3P51790 KRT8P7-201ENST00000533003 1432 ntBASIC20.57■□□□□ 0.88
CLCN3P51790 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms