Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
CDH3P22223 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.35■□□□□ 0.53
CDH3P22223 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
CDH3P22223 TSPY23P-201ENST00000440136 739 ntBASIC18.35■□□□□ 0.53
CDH3P22223 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.35■□□□□ 0.53
CDH3P22223 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CDH3P22223 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.35■□□□□ 0.53
CDH3P22223 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.35■□□□□ 0.53
CDH3P22223 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH3P22223 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH3P22223 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH3P22223 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH3P22223 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CDH3P22223 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.35■□□□□ 0.53
CDH3P22223 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH3P22223 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH3P22223 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
CDH3P22223 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CDH3P22223 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH3P22223 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH3P22223 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH3P22223 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CDH3P22223 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
CDH3P22223 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CDH3P22223 NOC2LP1-202ENST00000452600 2235 ntBASIC18.34■□□□□ 0.53
CDH3P22223 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CDH3P22223 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CDH3P22223 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 MIR1224-201ENST00000408193 85 ntBASIC18.34■□□□□ 0.53
CDH3P22223 HMGA1P5-201ENST00000412453 271 ntBASIC18.34■□□□□ 0.53
CDH3P22223 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CDH3P22223 AC007663.1-201ENST00000438948 1240 ntBASIC18.34■□□□□ 0.53
CDH3P22223 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH3P22223 FAM87A-204ENST00000613235 858 ntBASIC18.34■□□□□ 0.53
CDH3P22223 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH3P22223 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH3P22223 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH3P22223 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH3P22223 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH3P22223 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH3P22223 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH3P22223 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
CDH3P22223 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH3P22223 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.33■□□□□ 0.53
CDH3P22223 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
CDH3P22223 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH3P22223 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH3P22223 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
CDH3P22223 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.33■□□□□ 0.53
CDH3P22223 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CDH3P22223 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CDH3P22223 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH3P22223 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.33■□□□□ 0.52
CDH3P22223 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.33■□□□□ 0.52
CDH3P22223 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.33■□□□□ 0.52
CDH3P22223 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.33■□□□□ 0.52
CDH3P22223 AL353719.1-201ENST00000566847 864 ntBASIC18.33■□□□□ 0.52
CDH3P22223 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.33■□□□□ 0.52
CDH3P22223 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CDH3P22223 AC010653.2-201ENST00000623505 997 ntBASIC18.33■□□□□ 0.52
CDH3P22223 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
CDH3P22223 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.33■□□□□ 0.52
CDH3P22223 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CDH3P22223 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.33■□□□□ 0.52
CDH3P22223 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
CDH3P22223 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.33■□□□□ 0.52
CDH3P22223 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.33■□□□□ 0.52
CDH3P22223 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.33■□□□□ 0.52
CDH3P22223 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH3P22223 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CDH3P22223 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CDH3P22223 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.33■□□□□ 0.52
CDH3P22223 AL032819.2-201ENST00000624543 2162 ntBASIC18.32■□□□□ 0.52
CDH3P22223 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CDH3P22223 AC092338.2-201ENST00000568827 1415 ntBASIC18.32■□□□□ 0.52
CDH3P22223 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH3P22223 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH3P22223 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH3P22223 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH3P22223 AL049812.1-201ENST00000432563 2267 ntBASIC18.32■□□□□ 0.52
CDH3P22223 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CDH3P22223 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH3P22223 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH3P22223 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CDH3P22223 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.32■□□□□ 0.52
CDH3P22223 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms