Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
COL5A1P20908 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 AL512353.2-201ENST00000448759 1962 ntBASIC18■□□□□ 0.47
COL5A1P20908 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
COL5A1P20908 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
COL5A1P20908 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A1P20908 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.99■□□□□ 0.47
COL5A1P20908 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A1P20908 AC034236.2-201ENST00000606662 1610 ntBASIC17.99■□□□□ 0.47
COL5A1P20908 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A1P20908 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.99■□□□□ 0.47
COL5A1P20908 IGHGP-201ENST00000390555 1178 ntBASIC17.99■□□□□ 0.47
COL5A1P20908 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
COL5A1P20908 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.99■□□□□ 0.47
COL5A1P20908 LINC01711-201ENST00000598340 967 ntBASIC17.99■□□□□ 0.47
COL5A1P20908 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.99■□□□□ 0.47
COL5A1P20908 AL158211.5-201ENST00000623583 2518 ntBASIC17.99■□□□□ 0.47
COL5A1P20908 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
COL5A1P20908 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
COL5A1P20908 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
COL5A1P20908 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.99■□□□□ 0.47
COL5A1P20908 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A1P20908 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A1P20908 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
COL5A1P20908 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.98■□□□□ 0.47
COL5A1P20908 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A1P20908 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
COL5A1P20908 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.98■□□□□ 0.47
COL5A1P20908 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.98■□□□□ 0.47
COL5A1P20908 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 BX640515.1-201ENST00000617215 977 ntBASIC17.98■□□□□ 0.47
COL5A1P20908 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 AC008556.1-201ENST00000610908 2040 ntBASIC17.98■□□□□ 0.47
COL5A1P20908 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.98■□□□□ 0.47
COL5A1P20908 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A1P20908 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.98■□□□□ 0.47
COL5A1P20908 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
COL5A1P20908 NSUN5P1-202ENST00000421140 1535 ntBASIC17.98■□□□□ 0.47
COL5A1P20908 NSUN5P2-203ENST00000457352 1529 ntBASIC17.98■□□□□ 0.47
COL5A1P20908 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
COL5A1P20908 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.47
COL5A1P20908 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A1P20908 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.98■□□□□ 0.47
COL5A1P20908 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A1P20908 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.98■□□□□ 0.47
COL5A1P20908 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.98■□□□□ 0.47
COL5A1P20908 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.98■□□□□ 0.47
COL5A1P20908 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.98■□□□□ 0.47
COL5A1P20908 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A1P20908 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
COL5A1P20908 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A1P20908 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.98■□□□□ 0.47
COL5A1P20908 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A1P20908 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A1P20908 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A1P20908 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A1P20908 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.97■□□□□ 0.47
COL5A1P20908 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
COL5A1P20908 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.97■□□□□ 0.47
COL5A1P20908 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.97■□□□□ 0.47
COL5A1P20908 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A1P20908 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.97■□□□□ 0.47
COL5A1P20908 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A1P20908 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A1P20908 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.97■□□□□ 0.47
COL5A1P20908 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.97■□□□□ 0.47
COL5A1P20908 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.97■□□□□ 0.47
COL5A1P20908 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.97■□□□□ 0.47
COL5A1P20908 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.97■□□□□ 0.47
COL5A1P20908 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.97■□□□□ 0.47
COL5A1P20908 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
COL5A1P20908 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A1P20908 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
COL5A1P20908 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A1P20908 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.97■□□□□ 0.47
COL5A1P20908 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.97■□□□□ 0.47
COL5A1P20908 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A1P20908 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
COL5A1P20908 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.96■□□□□ 0.47
COL5A1P20908 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A1P20908 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A1P20908 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A1P20908 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.96■□□□□ 0.47
COL5A1P20908 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.96■□□□□ 0.47
COL5A1P20908 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms