Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.32■■□□□ 1
COL11A1P12107 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
COL11A1P12107 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL11A1P12107 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.32■■□□□ 1
COL11A1P12107 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.32■■□□□ 1
COL11A1P12107 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL11A1P12107 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.32■■□□□ 1
COL11A1P12107 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
COL11A1P12107 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC21.32■■□□□ 1
COL11A1P12107 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
COL11A1P12107 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL11A1P12107 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL11A1P12107 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
COL11A1P12107 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL11A1P12107 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL11A1P12107 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL11A1P12107 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.31■■□□□ 1
COL11A1P12107 AL032819.2-201ENST00000624543 2162 ntBASIC21.31■■□□□ 1
COL11A1P12107 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21.31■■□□□ 1
COL11A1P12107 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21.31■■□□□ 1
COL11A1P12107 AC104819.1-201ENST00000504587 486 ntBASIC21.31■■□□□ 1
COL11A1P12107 AC138894.3-201ENST00000603787 634 ntBASIC21.31■■□□□ 1
COL11A1P12107 AL592071.1-201ENST00000611956 408 ntBASIC21.31■■□□□ 1
COL11A1P12107 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC21.31■■□□□ 1
COL11A1P12107 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL11A1P12107 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL11A1P12107 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
COL11A1P12107 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL11A1P12107 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL11A1P12107 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.3■■□□□ 1
COL11A1P12107 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.3■■□□□ 1
COL11A1P12107 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL11A1P12107 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL11A1P12107 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
COL11A1P12107 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.3■■□□□ 1
COL11A1P12107 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
COL11A1P12107 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.3■■□□□ 1
COL11A1P12107 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL11A1P12107 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC21.3■■□□□ 1
COL11A1P12107 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
COL11A1P12107 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC21.3■■□□□ 1
COL11A1P12107 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
COL11A1P12107 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL11A1P12107 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL11A1P12107 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL11A1P12107 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
COL11A1P12107 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL11A1P12107 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
COL11A1P12107 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL11A1P12107 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL11A1P12107 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
COL11A1P12107 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL11A1P12107 AC004870.1-201ENST00000315132 882 ntBASIC21.29■■□□□ 1
COL11A1P12107 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC21.29■■□□□ 1
COL11A1P12107 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC21.29■■□□□ 1
COL11A1P12107 AC091607.1-201ENST00000490318 1060 ntBASIC21.29■■□□□ 1
COL11A1P12107 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.29■■□□□ 1
COL11A1P12107 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC21.29■■□□□ 1
COL11A1P12107 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC21.29■■□□□ 1
COL11A1P12107 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
COL11A1P12107 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC21.29■■□□□ 1
COL11A1P12107 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL11A1P12107 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
COL11A1P12107 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
COL11A1P12107 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL11A1P12107 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL11A1P12107 AL049812.1-201ENST00000432563 2267 ntBASIC21.29■■□□□ 1
COL11A1P12107 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
COL11A1P12107 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL11A1P12107 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL11A1P12107 AP000593.1-201ENST00000393668 712 ntBASIC21.29■■□□□ 1
COL11A1P12107 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
COL11A1P12107 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC21.29■■□□□ 1
COL11A1P12107 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC21.29■■□□□ 1
COL11A1P12107 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
COL11A1P12107 AL357033.4-201ENST00000617703 1807 ntBASIC21.29■■□□□ 1
COL11A1P12107 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.29■■□□□ 1
COL11A1P12107 AC093484.2-201ENST00000580996 2166 ntBASIC21.28■■□□□ 1
COL11A1P12107 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
COL11A1P12107 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.28■■□□□ 1
COL11A1P12107 KRT89P-201ENST00000620027 1478 ntBASIC21.28■■□□□ 1
COL11A1P12107 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
COL11A1P12107 FDX1P1-201ENST00000449115 551 ntBASIC21.28■■□□□ 1
COL11A1P12107 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC21.28■■□□□ 1
COL11A1P12107 AC024563.2-201ENST00000603282 481 ntBASIC21.28■■□□□ 1
COL11A1P12107 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
COL11A1P12107 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC21.28■■□□□ 1
COL11A1P12107 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL11A1P12107 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL11A1P12107 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL11A1P12107 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
COL11A1P12107 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL11A1P12107 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.27■■□□□ 1
COL11A1P12107 MIR564-202ENST00000385049 94 ntBASIC21.27■■□□□ 1
COL11A1P12107 PPOX-214ENST00000535223 664 ntTSL 3 BASIC21.27■■□□□ 1
COL11A1P12107 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.27■■□□□ 1
COL11A1P12107 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.27■■□□□ 1
COL11A1P12107 AL691432.3-201ENST00000621860 400 ntBASIC21.27■■□□□ 1
COL11A1P12107 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.27■■□□□ 1
COL11A1P12107 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms