Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
VIMP08670 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VIMP08670 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
VIMP08670 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VIMP08670 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VIMP08670 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
VIMP08670 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VIMP08670 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VIMP08670 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.84■□□□□ 0.61
VIMP08670 AC007322.4-201ENST00000509611 723 ntBASIC18.84■□□□□ 0.61
VIMP08670 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VIMP08670 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VIMP08670 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VIMP08670 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.84■□□□□ 0.61
VIMP08670 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VIMP08670 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VIMP08670 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.84■□□□□ 0.61
VIMP08670 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VIMP08670 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VIMP08670 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VIMP08670 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.84■□□□□ 0.61
VIMP08670 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.84■□□□□ 0.61
VIMP08670 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VIMP08670 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VIMP08670 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.83■□□□□ 0.61
VIMP08670 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
VIMP08670 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VIMP08670 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VIMP08670 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.83■□□□□ 0.6
VIMP08670 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VIMP08670 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VIMP08670 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.83■□□□□ 0.6
VIMP08670 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VIMP08670 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
VIMP08670 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
VIMP08670 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.83■□□□□ 0.6
VIMP08670 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
VIMP08670 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.83■□□□□ 0.6
VIMP08670 AC013268.1-206ENST00000638368 961 ntBASIC18.83■□□□□ 0.6
VIMP08670 AC112229.1-201ENST00000639295 961 ntBASIC18.83■□□□□ 0.6
VIMP08670 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VIMP08670 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.83■□□□□ 0.6
VIMP08670 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
VIMP08670 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VIMP08670 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
VIMP08670 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.83■□□□□ 0.6
VIMP08670 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VIMP08670 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
VIMP08670 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
VIMP08670 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VIMP08670 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
VIMP08670 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VIMP08670 AC135776.1-201ENST00000319817 2481 ntBASIC18.82■□□□□ 0.6
VIMP08670 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.82■□□□□ 0.6
VIMP08670 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.82■□□□□ 0.6
VIMP08670 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.82■□□□□ 0.6
VIMP08670 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
VIMP08670 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.82■□□□□ 0.6
VIMP08670 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 KRT18P14-201ENST00000534205 1250 ntBASIC18.82■□□□□ 0.6
VIMP08670 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.82■□□□□ 0.6
VIMP08670 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.82■□□□□ 0.6
VIMP08670 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.82■□□□□ 0.6
VIMP08670 CYP2T3P-201ENST00000601990 817 ntBASIC18.82■□□□□ 0.6
VIMP08670 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
VIMP08670 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.82■□□□□ 0.6
VIMP08670 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VIMP08670 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VIMP08670 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
VIMP08670 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.81■□□□□ 0.6
VIMP08670 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 AC012317.2-201ENST00000623305 2251 ntBASIC18.81■□□□□ 0.6
VIMP08670 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.81■□□□□ 0.6
VIMP08670 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
VIMP08670 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms