Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL4A1P02462 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC22.96■■□□□ 1.27
COL4A1P02462 KRT17P6-201ENST00000453795 1220 ntBASIC22.96■■□□□ 1.27
COL4A1P02462 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL4A1P02462 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL4A1P02462 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL4A1P02462 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL4A1P02462 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC22.95■■□□□ 1.27
COL4A1P02462 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.27
COL4A1P02462 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC22.95■■□□□ 1.27
COL4A1P02462 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC22.95■■□□□ 1.26
COL4A1P02462 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
COL4A1P02462 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
COL4A1P02462 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC22.95■■□□□ 1.26
COL4A1P02462 AP000867.3-201ENST00000524675 377 ntBASIC22.95■■□□□ 1.26
COL4A1P02462 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
COL4A1P02462 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC22.95■■□□□ 1.26
COL4A1P02462 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
COL4A1P02462 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
COL4A1P02462 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC22.95■■□□□ 1.26
COL4A1P02462 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
COL4A1P02462 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
COL4A1P02462 NFYC-AS1-201ENST00000606277 1687 ntBASIC22.94■■□□□ 1.26
COL4A1P02462 HEIH-201ENST00000623091 1652 ntBASIC22.94■■□□□ 1.26
COL4A1P02462 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC22.94■■□□□ 1.26
COL4A1P02462 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC22.94■■□□□ 1.26
COL4A1P02462 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
COL4A1P02462 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
COL4A1P02462 CYP51A1P1-201ENST00000492267 1507 ntBASIC22.94■■□□□ 1.26
COL4A1P02462 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC22.94■■□□□ 1.26
COL4A1P02462 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC22.94■■□□□ 1.26
COL4A1P02462 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL4A1P02462 AC138894.3-201ENST00000603787 634 ntBASIC22.94■■□□□ 1.26
COL4A1P02462 AL357033.4-201ENST00000617703 1807 ntBASIC22.94■■□□□ 1.26
COL4A1P02462 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL4A1P02462 AC007952.6-201ENST00000573168 2673 ntBASIC22.94■■□□□ 1.26
COL4A1P02462 AC003957.1-201ENST00000625108 2673 ntBASIC22.94■■□□□ 1.26
COL4A1P02462 AC034236.2-201ENST00000606662 1610 ntBASIC22.94■■□□□ 1.26
COL4A1P02462 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL4A1P02462 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC22.94■■□□□ 1.26
COL4A1P02462 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC22.94■■□□□ 1.26
COL4A1P02462 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC22.94■■□□□ 1.26
COL4A1P02462 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL4A1P02462 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC22.94■■□□□ 1.26
COL4A1P02462 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
COL4A1P02462 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC22.94■■□□□ 1.26
COL4A1P02462 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC22.94■■□□□ 1.26
COL4A1P02462 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL4A1P02462 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC22.93■■□□□ 1.26
COL4A1P02462 AL592071.1-201ENST00000611956 408 ntBASIC22.93■■□□□ 1.26
COL4A1P02462 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
COL4A1P02462 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL4A1P02462 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
COL4A1P02462 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC22.93■■□□□ 1.26
COL4A1P02462 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
COL4A1P02462 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC22.93■■□□□ 1.26
COL4A1P02462 AC233702.3-201ENST00000578656 1387 ntBASIC22.93■■□□□ 1.26
COL4A1P02462 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
COL4A1P02462 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL4A1P02462 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
COL4A1P02462 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
COL4A1P02462 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL4A1P02462 FOSL1P1-201ENST00000511041 816 ntBASIC22.93■■□□□ 1.26
COL4A1P02462 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC22.93■■□□□ 1.26
COL4A1P02462 AC074051.2-201ENST00000565115 352 ntBASIC22.93■■□□□ 1.26
COL4A1P02462 SLC25A6P4-201ENST00000586535 553 ntBASIC22.93■■□□□ 1.26
COL4A1P02462 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
COL4A1P02462 AC093484.2-201ENST00000580996 2166 ntBASIC22.93■■□□□ 1.26
COL4A1P02462 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
COL4A1P02462 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC22.93■■□□□ 1.26
COL4A1P02462 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
COL4A1P02462 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL4A1P02462 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL4A1P02462 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL4A1P02462 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL4A1P02462 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC22.92■■□□□ 1.26
COL4A1P02462 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC22.92■■□□□ 1.26
COL4A1P02462 IL11-204ENST00000590625 1028 ntTSL 2 BASIC22.92■■□□□ 1.26
COL4A1P02462 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC22.92■■□□□ 1.26
COL4A1P02462 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
COL4A1P02462 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
COL4A1P02462 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC22.92■■□□□ 1.26
COL4A1P02462 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL4A1P02462 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL4A1P02462 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC22.92■■□□□ 1.26
COL4A1P02462 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
COL4A1P02462 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
COL4A1P02462 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL4A1P02462 BAALC-202ENST00000306391 243 ntTSL 5 BASIC22.91■■□□□ 1.26
COL4A1P02462 BAALC-204ENST00000330955 222 ntTSL 5 BASIC22.91■■□□□ 1.26
COL4A1P02462 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC22.91■■□□□ 1.26
COL4A1P02462 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
COL4A1P02462 KRT8P7-201ENST00000533003 1432 ntBASIC22.91■■□□□ 1.26
COL4A1P02462 AL032819.2-201ENST00000624543 2162 ntBASIC22.91■■□□□ 1.26
COL4A1P02462 AC073130.3-201ENST00000624389 2278 ntBASIC22.91■■□□□ 1.26
COL4A1P02462 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC22.9■■□□□ 1.26
COL4A1P02462 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL4A1P02462 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC22.9■■□□□ 1.26
COL4A1P02462 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL4A1P02462 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms