Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AF186192.3-201ENST00000583427 947 ntBASIC18.35■□□□□ 0.53
SIX3O95343 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SIX3O95343 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.35■□□□□ 0.53
SIX3O95343 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX3O95343 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX3O95343 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX3O95343 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX3O95343 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX3O95343 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.35■□□□□ 0.53
SIX3O95343 AL133373.2-201ENST00000623187 2828 ntBASIC18.35■□□□□ 0.53
SIX3O95343 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX3O95343 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX3O95343 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX3O95343 AC073592.3-201ENST00000625118 1834 ntBASIC18.35■□□□□ 0.53
SIX3O95343 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.34■□□□□ 0.53
SIX3O95343 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.34■□□□□ 0.53
SIX3O95343 KRT8P3-201ENST00000519669 1449 ntBASIC18.34■□□□□ 0.53
SIX3O95343 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.34■□□□□ 0.53
SIX3O95343 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SIX3O95343 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.34■□□□□ 0.53
SIX3O95343 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.34■□□□□ 0.53
SIX3O95343 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.34■□□□□ 0.53
SIX3O95343 AC011298.2-201ENST00000617989 482 ntBASIC18.34■□□□□ 0.53
SIX3O95343 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SIX3O95343 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.34■□□□□ 0.53
SIX3O95343 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX3O95343 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.34■□□□□ 0.53
SIX3O95343 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.33■□□□□ 0.53
SIX3O95343 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SIX3O95343 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SIX3O95343 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.33■□□□□ 0.53
SIX3O95343 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SIX3O95343 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SIX3O95343 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SIX3O95343 AC005332.8-201ENST00000622750 2735 ntBASIC18.33■□□□□ 0.53
SIX3O95343 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.33■□□□□ 0.53
SIX3O95343 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SIX3O95343 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SIX3O95343 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.53
SIX3O95343 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.33■□□□□ 0.53
SIX3O95343 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SIX3O95343 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX3O95343 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
SIX3O95343 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX3O95343 AL353807.1-201ENST00000427475 662 ntBASIC18.33■□□□□ 0.52
SIX3O95343 AC011506.1-201ENST00000474329 610 ntBASIC18.33■□□□□ 0.52
SIX3O95343 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SIX3O95343 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.33■□□□□ 0.52
SIX3O95343 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX3O95343 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.33■□□□□ 0.52
SIX3O95343 AL031985.4-201ENST00000642138 673 ntBASIC18.33■□□□□ 0.52
SIX3O95343 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX3O95343 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX3O95343 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.33■□□□□ 0.52
SIX3O95343 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.33■□□□□ 0.52
SIX3O95343 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
SIX3O95343 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
SIX3O95343 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX3O95343 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.32■□□□□ 0.52
SIX3O95343 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX3O95343 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SIX3O95343 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.32■□□□□ 0.52
SIX3O95343 AL359736.2-201ENST00000621992 437 ntBASIC18.32■□□□□ 0.52
SIX3O95343 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX3O95343 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SIX3O95343 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX3O95343 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SIX3O95343 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SIX3O95343 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX3O95343 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms