Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RNF40O75150 BICD1-207ENST00000551848 1962 ntBASIC20.22■□□□□ 0.83
RNF40O75150 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
RNF40O75150 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF40O75150 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.22■□□□□ 0.83
RNF40O75150 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF40O75150 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF40O75150 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.22■□□□□ 0.83
RNF40O75150 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF40O75150 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF40O75150 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.22■□□□□ 0.83
RNF40O75150 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
RNF40O75150 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF40O75150 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
RNF40O75150 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF40O75150 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.21■□□□□ 0.83
RNF40O75150 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
RNF40O75150 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF40O75150 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.21■□□□□ 0.83
RNF40O75150 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF40O75150 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF40O75150 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF40O75150 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RNF40O75150 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.21■□□□□ 0.83
RNF40O75150 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.21■□□□□ 0.83
RNF40O75150 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF40O75150 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF40O75150 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RNF40O75150 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
RNF40O75150 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF40O75150 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF40O75150 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF40O75150 AL161938.1-201ENST00000569833 2180 ntBASIC20.21■□□□□ 0.83
RNF40O75150 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF40O75150 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF40O75150 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RNF40O75150 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
RNF40O75150 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF40O75150 KRT16P1-201ENST00000399124 1418 ntBASIC20.2■□□□□ 0.82
RNF40O75150 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF40O75150 CYP2D8P-201ENST00000433633 1490 ntBASIC20.2■□□□□ 0.82
RNF40O75150 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF40O75150 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF40O75150 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF40O75150 KRT18P57-201ENST00000443599 1254 ntBASIC20.2■□□□□ 0.82
RNF40O75150 AC116562.2-201ENST00000507042 360 ntBASIC20.2■□□□□ 0.82
RNF40O75150 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF40O75150 NAPSB-206ENST00000562112 1266 ntBASIC20.2■□□□□ 0.82
RNF40O75150 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF40O75150 AL590326.2-201ENST00000625139 305 ntBASIC20.2■□□□□ 0.82
RNF40O75150 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RNF40O75150 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
RNF40O75150 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF40O75150 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
RNF40O75150 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF40O75150 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF40O75150 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF40O75150 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF40O75150 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
RNF40O75150 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF40O75150 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF40O75150 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF40O75150 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF40O75150 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF40O75150 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF40O75150 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF40O75150 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF40O75150 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF40O75150 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.19■□□□□ 0.82
RNF40O75150 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF40O75150 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF40O75150 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
RNF40O75150 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF40O75150 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF40O75150 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF40O75150 AC113347.1-201ENST00000413321 391 ntBASIC20.19■□□□□ 0.82
RNF40O75150 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.19■□□□□ 0.82
RNF40O75150 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.19■□□□□ 0.82
RNF40O75150 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF40O75150 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.19■□□□□ 0.82
RNF40O75150 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.19■□□□□ 0.82
RNF40O75150 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.19■□□□□ 0.82
RNF40O75150 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF40O75150 FITM1-202ENST00000559294 800 ntBASIC20.19■□□□□ 0.82
RNF40O75150 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF40O75150 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF40O75150 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF40O75150 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.19■□□□□ 0.82
RNF40O75150 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF40O75150 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.19■□□□□ 0.82
RNF40O75150 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF40O75150 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
RNF40O75150 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF40O75150 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RNF40O75150 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF40O75150 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF40O75150 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF40O75150 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF40O75150 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF40O75150 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms