Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC16.5■□□□□ 0.23
LMX1BO60663 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LMX1BO60663 AC135050.7-201ENST00000624508 2218 ntBASIC16.5■□□□□ 0.23
LMX1BO60663 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1BO60663 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.5■□□□□ 0.23
LMX1BO60663 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
LMX1BO60663 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1BO60663 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.5■□□□□ 0.23
LMX1BO60663 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
LMX1BO60663 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.5■□□□□ 0.23
LMX1BO60663 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.5■□□□□ 0.23
LMX1BO60663 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1BO60663 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1BO60663 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
LMX1BO60663 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1BO60663 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC16.5■□□□□ 0.23
LMX1BO60663 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1BO60663 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1BO60663 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.5■□□□□ 0.23
LMX1BO60663 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC16.5■□□□□ 0.23
LMX1BO60663 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
LMX1BO60663 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.5■□□□□ 0.23
LMX1BO60663 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC16.5■□□□□ 0.23
LMX1BO60663 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.5■□□□□ 0.23
LMX1BO60663 MIR6786-201ENST00000616843 113 ntBASIC16.5■□□□□ 0.23
LMX1BO60663 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.5■□□□□ 0.23
LMX1BO60663 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1BO60663 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1BO60663 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1BO60663 AC005332.8-201ENST00000622750 2735 ntBASIC16.5■□□□□ 0.23
LMX1BO60663 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1BO60663 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.5■□□□□ 0.23
LMX1BO60663 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
LMX1BO60663 AC026471.1-201ENST00000564629 3026 ntBASIC16.5■□□□□ 0.23
LMX1BO60663 AL390961.4-201ENST00000623958 2535 ntBASIC16.5■□□□□ 0.23
LMX1BO60663 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1BO60663 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1BO60663 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
LMX1BO60663 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.5■□□□□ 0.23
LMX1BO60663 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
LMX1BO60663 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.49■□□□□ 0.23
LMX1BO60663 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1BO60663 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1BO60663 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1BO60663 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1BO60663 UNC93B2-201ENST00000285383 730 ntBASIC16.49■□□□□ 0.23
LMX1BO60663 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1BO60663 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1BO60663 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
LMX1BO60663 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1BO60663 TSPY23P-201ENST00000440136 739 ntBASIC16.49■□□□□ 0.23
LMX1BO60663 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1BO60663 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.49■□□□□ 0.23
LMX1BO60663 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC16.49■□□□□ 0.23
LMX1BO60663 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.49■□□□□ 0.23
LMX1BO60663 AC145285.6-201ENST00000604632 637 ntBASIC16.49■□□□□ 0.23
LMX1BO60663 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC16.49■□□□□ 0.23
LMX1BO60663 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.49■□□□□ 0.23
LMX1BO60663 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1BO60663 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1BO60663 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.48■□□□□ 0.23
LMX1BO60663 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
LMX1BO60663 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.48■□□□□ 0.23
LMX1BO60663 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC16.48■□□□□ 0.23
LMX1BO60663 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.48■□□□□ 0.23
LMX1BO60663 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
LMX1BO60663 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC16.48■□□□□ 0.23
LMX1BO60663 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.48■□□□□ 0.23
LMX1BO60663 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC16.48■□□□□ 0.23
LMX1BO60663 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.48■□□□□ 0.23
LMX1BO60663 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.48■□□□□ 0.23
LMX1BO60663 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.48■□□□□ 0.23
LMX1BO60663 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
LMX1BO60663 AP002982.1-201ENST00000492365 877 ntBASIC16.48■□□□□ 0.23
LMX1BO60663 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.48■□□□□ 0.23
LMX1BO60663 AL160286.2-201ENST00000567150 934 ntBASIC16.48■□□□□ 0.23
LMX1BO60663 C1QL1P1-201ENST00000568105 661 ntBASIC16.48■□□□□ 0.23
LMX1BO60663 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.48■□□□□ 0.23
LMX1BO60663 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.48■□□□□ 0.23
LMX1BO60663 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 AC083906.6-201ENST00000641366 219 ntBASIC16.48■□□□□ 0.23
LMX1BO60663 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
LMX1BO60663 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
LMX1BO60663 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1BO60663 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1BO60663 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms