Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
FOXN3O00409 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.1■□□□□ 0.81
FOXN3O00409 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXN3O00409 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
FOXN3O00409 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXN3O00409 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXN3O00409 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
FOXN3O00409 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
FOXN3O00409 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
FOXN3O00409 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXN3O00409 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
FOXN3O00409 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXN3O00409 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXN3O00409 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
FOXN3O00409 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.09■□□□□ 0.81
FOXN3O00409 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXN3O00409 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
FOXN3O00409 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.09■□□□□ 0.81
FOXN3O00409 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.09■□□□□ 0.81
FOXN3O00409 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXN3O00409 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.09■□□□□ 0.81
FOXN3O00409 CRYGFP-201ENST00000418459 633 ntBASIC20.09■□□□□ 0.81
FOXN3O00409 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.09■□□□□ 0.81
FOXN3O00409 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.09■□□□□ 0.81
FOXN3O00409 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.09■□□□□ 0.81
FOXN3O00409 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.09■□□□□ 0.81
FOXN3O00409 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
FOXN3O00409 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXN3O00409 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXN3O00409 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXN3O00409 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
FOXN3O00409 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXN3O00409 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.09■□□□□ 0.81
FOXN3O00409 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXN3O00409 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
FOXN3O00409 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
FOXN3O00409 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
FOXN3O00409 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.81
FOXN3O00409 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
FOXN3O00409 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.08■□□□□ 0.81
FOXN3O00409 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
FOXN3O00409 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
FOXN3O00409 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
FOXN3O00409 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
FOXN3O00409 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.81
FOXN3O00409 AC008556.1-201ENST00000610908 2040 ntBASIC20.08■□□□□ 0.8
FOXN3O00409 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
FOXN3O00409 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXN3O00409 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
FOXN3O00409 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXN3O00409 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXN3O00409 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXN3O00409 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.08■□□□□ 0.8
FOXN3O00409 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXN3O00409 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.08■□□□□ 0.8
FOXN3O00409 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 AC073592.3-201ENST00000625118 1834 ntBASIC20.07■□□□□ 0.8
FOXN3O00409 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.07■□□□□ 0.8
FOXN3O00409 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
FOXN3O00409 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
FOXN3O00409 MIR718-201ENST00000390190 70 ntBASIC20.07■□□□□ 0.8
FOXN3O00409 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.07■□□□□ 0.8
FOXN3O00409 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.07■□□□□ 0.8
FOXN3O00409 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.07■□□□□ 0.8
FOXN3O00409 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.07■□□□□ 0.8
FOXN3O00409 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.07■□□□□ 0.8
FOXN3O00409 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.07■□□□□ 0.8
FOXN3O00409 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
FOXN3O00409 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
FOXN3O00409 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
FOXN3O00409 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
FOXN3O00409 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXN3O00409 AL109659.2-201ENST00000606809 1674 ntBASIC20.07■□□□□ 0.8
FOXN3O00409 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXN3O00409 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXN3O00409 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXN3O00409 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.06■□□□□ 0.8
FOXN3O00409 AC007613.1-201ENST00000572811 2597 ntBASIC20.06■□□□□ 0.8
FOXN3O00409 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
FOXN3O00409 AC135050.7-201ENST00000624508 2218 ntBASIC20.06■□□□□ 0.8
FOXN3O00409 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.06■□□□□ 0.8
FOXN3O00409 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXN3O00409 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms