Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
FOXA2Q9Y261 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
FOXA2Q9Y261 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC20.3■□□□□ 0.84
FOXA2Q9Y261 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.3■□□□□ 0.84
FOXA2Q9Y261 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
FOXA2Q9Y261 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
FOXA2Q9Y261 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
FOXA2Q9Y261 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.3■□□□□ 0.84
FOXA2Q9Y261 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
FOXA2Q9Y261 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
FOXA2Q9Y261 AC018358.1-201ENST00000631079 1402 ntBASIC20.29■□□□□ 0.84
FOXA2Q9Y261 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
FOXA2Q9Y261 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
FOXA2Q9Y261 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.29■□□□□ 0.84
FOXA2Q9Y261 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.29■□□□□ 0.84
FOXA2Q9Y261 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.29■□□□□ 0.84
FOXA2Q9Y261 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
FOXA2Q9Y261 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
FOXA2Q9Y261 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.28■□□□□ 0.84
FOXA2Q9Y261 LINC00273-201ENST00000539813 1452 ntBASIC20.27■□□□□ 0.84
FOXA2Q9Y261 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
FOXA2Q9Y261 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
FOXA2Q9Y261 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.26■□□□□ 0.83
FOXA2Q9Y261 CALM3-209ENST00000597743 577 ntTSL 4 BASIC20.26■□□□□ 0.83
FOXA2Q9Y261 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
FOXA2Q9Y261 WHAMMP2-203ENST00000563942 1603 ntBASIC20.26■□□□□ 0.83
FOXA2Q9Y261 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
FOXA2Q9Y261 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA2Q9Y261 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
FOXA2Q9Y261 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
FOXA2Q9Y261 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA2Q9Y261 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA2Q9Y261 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.25■□□□□ 0.83
FOXA2Q9Y261 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.25■□□□□ 0.83
FOXA2Q9Y261 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA2Q9Y261 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
FOXA2Q9Y261 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
FOXA2Q9Y261 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.23■□□□□ 0.83
FOXA2Q9Y261 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
FOXA2Q9Y261 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
FOXA2Q9Y261 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
FOXA2Q9Y261 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.23■□□□□ 0.83
FOXA2Q9Y261 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
FOXA2Q9Y261 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.23■□□□□ 0.83
FOXA2Q9Y261 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC20.23■□□□□ 0.83
FOXA2Q9Y261 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC20.23■□□□□ 0.83
FOXA2Q9Y261 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA2Q9Y261 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
FOXA2Q9Y261 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.22■□□□□ 0.83
FOXA2Q9Y261 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA2Q9Y261 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.22■□□□□ 0.83
FOXA2Q9Y261 ABHD17AP4-201ENST00000411545 909 ntBASIC20.22■□□□□ 0.83
FOXA2Q9Y261 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.22■□□□□ 0.83
FOXA2Q9Y261 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA2Q9Y261 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA2Q9Y261 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA2Q9Y261 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.22■□□□□ 0.83
FOXA2Q9Y261 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC20.21■□□□□ 0.83
FOXA2Q9Y261 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
FOXA2Q9Y261 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
FOXA2Q9Y261 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC20.21■□□□□ 0.83
FOXA2Q9Y261 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
FOXA2Q9Y261 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
FOXA2Q9Y261 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
FOXA2Q9Y261 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
FOXA2Q9Y261 ZNRF2P2-203ENST00000454624 420 ntBASIC20.19■□□□□ 0.82
FOXA2Q9Y261 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.19■□□□□ 0.82
FOXA2Q9Y261 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
FOXA2Q9Y261 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
FOXA2Q9Y261 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA2Q9Y261 LINC01971-201ENST00000617888 1048 ntBASIC20.17■□□□□ 0.82
FOXA2Q9Y261 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA2Q9Y261 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA2Q9Y261 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
FOXA2Q9Y261 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA2Q9Y261 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA2Q9Y261 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA2Q9Y261 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA2Q9Y261 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA2Q9Y261 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA2Q9Y261 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA2Q9Y261 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
FOXA2Q9Y261 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
FOXA2Q9Y261 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA2Q9Y261 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
FOXA2Q9Y261 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
FOXA2Q9Y261 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
FOXA2Q9Y261 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
FOXA2Q9Y261 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
FOXA2Q9Y261 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
FOXA2Q9Y261 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
FOXA2Q9Y261 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
FOXA2Q9Y261 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.14■□□□□ 0.81
FOXA2Q9Y261 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.14■□□□□ 0.81
FOXA2Q9Y261 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXA2Q9Y261 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.13■□□□□ 0.81
FOXA2Q9Y261 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.13■□□□□ 0.81
FOXA2Q9Y261 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms