Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
NPHP1O15259 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC31.86■■■□□ 2.69
NPHP1O15259 MED25-210ENST00000612854 801 ntTSL 5 BASIC31.86■■■□□ 2.69
NPHP1O15259 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
NPHP1O15259 MED25-214ENST00000622402 642 ntTSL 5 BASIC31.86■■■□□ 2.69
NPHP1O15259 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
NPHP1O15259 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
NPHP1O15259 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
NPHP1O15259 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
NPHP1O15259 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC31.85■■■□□ 2.69
NPHP1O15259 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC31.85■■■□□ 2.69
NPHP1O15259 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
NPHP1O15259 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
NPHP1O15259 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC31.83■■■□□ 2.69
NPHP1O15259 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
NPHP1O15259 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
NPHP1O15259 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
NPHP1O15259 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC31.82■■■□□ 2.69
NPHP1O15259 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
NPHP1O15259 REST-210ENST00000638187 1334 ntTSL 5 BASIC31.81■■■□□ 2.68
NPHP1O15259 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC31.81■■■□□ 2.68
NPHP1O15259 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP1O15259 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP1O15259 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP1O15259 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP1O15259 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP1O15259 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC31.8■■■□□ 2.68
NPHP1O15259 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
NPHP1O15259 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
NPHP1O15259 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
NPHP1O15259 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
NPHP1O15259 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
NPHP1O15259 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
NPHP1O15259 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC31.79■■■□□ 2.68
NPHP1O15259 AL157400.5-201ENST00000507624 621 ntBASIC31.79■■■□□ 2.68
NPHP1O15259 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC31.79■■■□□ 2.68
NPHP1O15259 DUX4L18-201ENST00000553347 1267 ntBASIC31.78■■■□□ 2.68
NPHP1O15259 AC007029.1-201ENST00000604183 313 ntBASIC31.78■■■□□ 2.68
NPHP1O15259 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC31.77■■■□□ 2.68
NPHP1O15259 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
NPHP1O15259 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC31.76■■■□□ 2.67
NPHP1O15259 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC31.76■■■□□ 2.67
NPHP1O15259 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC31.75■■■□□ 2.67
NPHP1O15259 AC133552.2-201ENST00000619106 1032 ntBASIC31.75■■■□□ 2.67
NPHP1O15259 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC31.75■■■□□ 2.67
NPHP1O15259 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC31.75■■■□□ 2.67
NPHP1O15259 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
NPHP1O15259 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
NPHP1O15259 AC129492.7-201ENST00000622992 756 ntBASIC31.74■■■□□ 2.67
NPHP1O15259 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
NPHP1O15259 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC31.73■■■□□ 2.67
NPHP1O15259 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC31.73■■■□□ 2.67
NPHP1O15259 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC31.73■■■□□ 2.67
NPHP1O15259 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC31.72■■■□□ 2.67
NPHP1O15259 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
NPHP1O15259 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC31.72■■■□□ 2.67
NPHP1O15259 AL592293.1-201ENST00000502889 1188 ntBASIC31.71■■■□□ 2.67
NPHP1O15259 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
NPHP1O15259 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
NPHP1O15259 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC31.7■■■□□ 2.67
NPHP1O15259 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC31.7■■■□□ 2.67
NPHP1O15259 ST7-205ENST00000393446 2114 ntTSL 5 BASIC31.7■■■□□ 2.66
NPHP1O15259 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
NPHP1O15259 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
NPHP1O15259 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
NPHP1O15259 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC31.69■■■□□ 2.66
NPHP1O15259 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
NPHP1O15259 AC009831.1-201ENST00000580420 1582 ntBASIC31.68■■■□□ 2.66
NPHP1O15259 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP1O15259 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.68■■■□□ 2.66
NPHP1O15259 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP1O15259 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP1O15259 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP1O15259 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC31.68■■■□□ 2.66
NPHP1O15259 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.68■■■□□ 2.66
NPHP1O15259 SMPD5-203ENST00000639008 1464 ntBASIC31.67■■■□□ 2.66
NPHP1O15259 HES4-204ENST00000484667 667 ntTSL 3 BASIC31.67■■■□□ 2.66
NPHP1O15259 AL359258.2-201ENST00000564063 1566 ntBASIC31.67■■■□□ 2.66
NPHP1O15259 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC31.67■■■□□ 2.66
NPHP1O15259 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC31.66■■■□□ 2.66
NPHP1O15259 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
NPHP1O15259 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC31.65■■■□□ 2.66
NPHP1O15259 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC31.64■■■□□ 2.66
NPHP1O15259 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
NPHP1O15259 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC31.64■■■□□ 2.66
NPHP1O15259 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
NPHP1O15259 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC31.63■■■□□ 2.65
NPHP1O15259 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
NPHP1O15259 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
NPHP1O15259 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
NPHP1O15259 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
NPHP1O15259 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
NPHP1O15259 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
NPHP1O15259 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC31.62■■■□□ 2.65
NPHP1O15259 AC100797.4-201ENST00000631653 1827 ntBASIC31.62■■■□□ 2.65
NPHP1O15259 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC31.61■■■□□ 2.65
NPHP1O15259 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
NPHP1O15259 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
NPHP1O15259 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
NPHP1O15259 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC31.6■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms