Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SMIM28A0A1B0GU29 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SMIM28A0A1B0GU29 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC27.3■■□□□ 1.96
SMIM28A0A1B0GU29 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SMIM28A0A1B0GU29 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
SMIM28A0A1B0GU29 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC27.29■■□□□ 1.96
SMIM28A0A1B0GU29 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SMIM28A0A1B0GU29 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
SMIM28A0A1B0GU29 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC27.28■■□□□ 1.96
SMIM28A0A1B0GU29 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
SMIM28A0A1B0GU29 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC27.28■■□□□ 1.96
SMIM28A0A1B0GU29 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
SMIM28A0A1B0GU29 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
SMIM28A0A1B0GU29 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SMIM28A0A1B0GU29 AP002414.2-202ENST00000590929 1450 ntBASIC27.27■■□□□ 1.96
SMIM28A0A1B0GU29 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SMIM28A0A1B0GU29 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SMIM28A0A1B0GU29 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
SMIM28A0A1B0GU29 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
SMIM28A0A1B0GU29 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
SMIM28A0A1B0GU29 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SMIM28A0A1B0GU29 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SMIM28A0A1B0GU29 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SMIM28A0A1B0GU29 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC27.26■■□□□ 1.95
SMIM28A0A1B0GU29 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SMIM28A0A1B0GU29 AC139426.1-201ENST00000568218 2529 ntBASIC27.26■■□□□ 1.95
SMIM28A0A1B0GU29 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SMIM28A0A1B0GU29 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC27.25■■□□□ 1.95
SMIM28A0A1B0GU29 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC27.25■■□□□ 1.95
SMIM28A0A1B0GU29 RNF126P1-201ENST00000567452 1320 ntBASIC27.24■■□□□ 1.95
SMIM28A0A1B0GU29 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC27.24■■□□□ 1.95
SMIM28A0A1B0GU29 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SMIM28A0A1B0GU29 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SMIM28A0A1B0GU29 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
SMIM28A0A1B0GU29 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
SMIM28A0A1B0GU29 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
SMIM28A0A1B0GU29 RARRES2P2-201ENST00000394842 485 ntBASIC27.23■■□□□ 1.95
SMIM28A0A1B0GU29 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC27.23■■□□□ 1.95
SMIM28A0A1B0GU29 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
SMIM28A0A1B0GU29 AC060814.1-201ENST00000554326 538 ntBASIC27.22■■□□□ 1.95
SMIM28A0A1B0GU29 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SMIM28A0A1B0GU29 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SMIM28A0A1B0GU29 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC27.21■■□□□ 1.95
SMIM28A0A1B0GU29 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
SMIM28A0A1B0GU29 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC27.2■■□□□ 1.95
SMIM28A0A1B0GU29 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SMIM28A0A1B0GU29 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.94
SMIM28A0A1B0GU29 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC27.19■■□□□ 1.94
SMIM28A0A1B0GU29 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC27.19■■□□□ 1.94
SMIM28A0A1B0GU29 MED25-210ENST00000612854 801 ntTSL 5 BASIC27.19■■□□□ 1.94
SMIM28A0A1B0GU29 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
SMIM28A0A1B0GU29 MED25-214ENST00000622402 642 ntTSL 5 BASIC27.19■■□□□ 1.94
SMIM28A0A1B0GU29 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SMIM28A0A1B0GU29 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SMIM28A0A1B0GU29 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC27.18■■□□□ 1.94
SMIM28A0A1B0GU29 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
SMIM28A0A1B0GU29 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SMIM28A0A1B0GU29 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC27.17■■□□□ 1.94
SMIM28A0A1B0GU29 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
SMIM28A0A1B0GU29 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC27.16■■□□□ 1.94
SMIM28A0A1B0GU29 HES4-202ENST00000428771 1040 ntTSL 2 BASIC27.16■■□□□ 1.94
SMIM28A0A1B0GU29 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC27.16■■□□□ 1.94
SMIM28A0A1B0GU29 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC27.16■■□□□ 1.94
SMIM28A0A1B0GU29 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SMIM28A0A1B0GU29 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC27.15■■□□□ 1.94
SMIM28A0A1B0GU29 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC27.14■■□□□ 1.94
SMIM28A0A1B0GU29 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC27.14■■□□□ 1.94
SMIM28A0A1B0GU29 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SMIM28A0A1B0GU29 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SMIM28A0A1B0GU29 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
SMIM28A0A1B0GU29 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC27.13■■□□□ 1.93
SMIM28A0A1B0GU29 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
SMIM28A0A1B0GU29 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC27.13■■□□□ 1.93
SMIM28A0A1B0GU29 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC27.13■■□□□ 1.93
SMIM28A0A1B0GU29 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
SMIM28A0A1B0GU29 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SMIM28A0A1B0GU29 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SMIM28A0A1B0GU29 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SMIM28A0A1B0GU29 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
SMIM28A0A1B0GU29 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC27.11■■□□□ 1.93
SMIM28A0A1B0GU29 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMIM28A0A1B0GU29 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMIM28A0A1B0GU29 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMIM28A0A1B0GU29 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SMIM28A0A1B0GU29 AC126177.7-201ENST00000547904 679 ntBASIC27.1■■□□□ 1.93
SMIM28A0A1B0GU29 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
SMIM28A0A1B0GU29 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC27.1■■□□□ 1.93
SMIM28A0A1B0GU29 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SMIM28A0A1B0GU29 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SMIM28A0A1B0GU29 AC092296.2-201ENST00000589470 999 ntBASIC27.09■■□□□ 1.93
SMIM28A0A1B0GU29 PROC-203ENST00000409048 1586 ntTSL 5 BASIC27.08■■□□□ 1.93
SMIM28A0A1B0GU29 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SMIM28A0A1B0GU29 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SMIM28A0A1B0GU29 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SMIM28A0A1B0GU29 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SMIM28A0A1B0GU29 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC27.07■■□□□ 1.92
SMIM28A0A1B0GU29 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SMIM28A0A1B0GU29 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC27.07■■□□□ 1.92
SMIM28A0A1B0GU29 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
SMIM28A0A1B0GU29 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 140.8 ms