RNA–Protein interactions for RNA: ENST00000640135.1

SCN1B-208, Transcript of sodium voltage-gated channel beta subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1B, Length 4,846 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1B-208ENST00000640135 DCAF8L2P0C7V8 631 aa19.59■□□□□ 0.73
SCN1B-208ENST00000640135 NISCHQ9Y2I1 1504 aa19.47■□□□□ 0.71
SCN1B-208ENST00000640135 SUPT5HO00267 1087 aaKnown RBP18.24■□□□□ 0.51
SCN1B-208ENST00000640135 SHROOM4Q9ULL8 1493 aa18■□□□□ 0.47
SCN1B-208ENST00000640135 FAM9AQ8IZU1 332 aaPredicted RBP17.7■□□□□ 0.42
SCN1B-208ENST00000640135 APLP2Q06481 763 aa17.54■□□□□ 0.4
SCN1B-208ENST00000640135 EHMT2Q96KQ7 1210 aa17.33■□□□□ 0.36
SCN1B-208ENST00000640135 TRIM41Q8WV44 630 aa17.11■□□□□ 0.33
SCN1B-208ENST00000640135 UBTFP17480 764 aaKnown RBP16.89■□□□□ 0.29
SCN1B-208ENST00000640135 ABCC9O60706 1549 aa16.89■□□□□ 0.29
SCN1B-208ENST00000640135 ATP1B4Q9UN42 357 aaPredicted RBP16.87■□□□□ 0.29
SCN1B-208ENST00000640135 RANGAP1P46060 587 aaPredicted RBP16.84■□□□□ 0.29
SCN1B-208ENST00000640135 PELP1Q8IZL8 1130 aaKnown RBP16.82■□□□□ 0.28
SCN1B-208ENST00000640135 TTBK1Q5TCY1 1321 aaPredicted RBP16.71■□□□□ 0.26
SCN1B-208ENST00000640135 ZEB1P37275 1124 aaPredicted RBP16.61■□□□□ 0.25
SCN1B-208ENST00000640135 CCDC180Q9P1Z9 1646 aa16.57■□□□□ 0.24
SCN1B-208ENST00000640135 PCGF6Q9BYE7 350 aa16.57■□□□□ 0.24
SCN1B-208ENST00000640135 PABPN1Q86U42 306 aaKnown RBP eCLIP16.5■□□□□ 0.23
SCN1B-208ENST00000640135 CCER1Q8TC90 406 aaPredicted RBP16.5■□□□□ 0.23
SCN1B-208ENST00000640135 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.47■□□□□ 0.23
SCN1B-208ENST00000640135 HNRNPUL2Q1KMD3 747 aaKnown RBP16.47■□□□□ 0.23
SCN1B-208ENST00000640135 MYT1LQ9UL68 1186 aa16.41■□□□□ 0.22
SCN1B-208ENST00000640135 CENPBP07199 599 aaPredicted RBP16.24■□□□□ 0.19
SCN1B-208ENST00000640135 CHIC1Q5VXU3 224 aa16.22■□□□□ 0.19
SCN1B-208ENST00000640135 MYT1Q01538 1121 aa16.21■□□□□ 0.19
SCN1B-208ENST00000640135 TRIM26Q12899 539 aaPredicted RBP16.16■□□□□ 0.18
SCN1B-208ENST00000640135 ZCCHC6Q5VYS8 1495 aaKnown RBP16.12■□□□□ 0.17
SCN1B-208ENST00000640135 ITGAEP38570 1179 aa16.11■□□□□ 0.17
SCN1B-208ENST00000640135 RB1CC1Q8TDY2 1594 aa16.11■□□□□ 0.17
SCN1B-208ENST00000640135 PPARGC1BQ86YN6 1023 aaKnown RBP16.06■□□□□ 0.16
SCN1B-208ENST00000640135 NEFLP07196 543 aa16.02■□□□□ 0.16
SCN1B-208ENST00000640135 FBLN2P98095 1184 aa16.02■□□□□ 0.15
SCN1B-208ENST00000640135 NACADO15069 1562 aa16.01■□□□□ 0.15
SCN1B-208ENST00000640135 LOC105371045A0A1W2PR82 267 aa15.98■□□□□ 0.15
SCN1B-208ENST00000640135 SCRIBQ14160 1630 aa15.95■□□□□ 0.14
SCN1B-208ENST00000640135 FAM50AQ14320 339 aaKnown RBP15.88■□□□□ 0.13
SCN1B-208ENST00000640135 POLR3GLQ9BT43 218 aa15.87■□□□□ 0.13
SCN1B-208ENST00000640135 ERICH6Q7L0X2 663 aa15.85■□□□□ 0.13
SCN1B-208ENST00000640135 CDK11AQ9UQ88 783 aaPredicted RBP15.83■□□□□ 0.13
SCN1B-208ENST00000640135 CSRNP3Q8WYN3 585 aa15.81■□□□□ 0.12
SCN1B-208ENST00000640135 TRIM52Q96A61 297 aa15.81■□□□□ 0.12
SCN1B-208ENST00000640135 DCAF1Q9Y4B6 1507 aa15.75■□□□□ 0.11
SCN1B-208ENST00000640135 NPM1P06748 294 aaKnown RBP eCLIP15.74■□□□□ 0.11
SCN1B-208ENST00000640135 SLC4A1APQ9BWU0 796 aaKnown RBP15.74■□□□□ 0.11
SCN1B-208ENST00000640135 YTHDC1Q96MU7 727 aaKnown RBP15.68■□□□□ 0.1
SCN1B-208ENST00000640135 HRCP23327 699 aa15.64■□□□□ 0.09
SCN1B-208ENST00000640135 ESF1Q9H501 851 aaKnown RBP15.62■□□□□ 0.09
SCN1B-208ENST00000640135 P3H3Q8IVL6 736 aa15.61■□□□□ 0.09
SCN1B-208ENST00000640135 MYO15BQ96JP2 1530 aa15.57■□□□□ 0.08
SCN1B-208ENST00000640135 ZNF777Q9ULD5 760 aaPredicted RBP15.53■□□□□ 0.08
SCN1B-208ENST00000640135 CHMP7Q8WUX9 453 aaPredicted RBP15.52■□□□□ 0.08
SCN1B-208ENST00000640135 NEUROD1Q13562 356 aa15.52■□□□□ 0.07
SCN1B-208ENST00000640135 BCANQ96GW7 911 aa15.51■□□□□ 0.07
SCN1B-208ENST00000640135 CNGB1Q14028 1251 aaPredicted RBP15.5■□□□□ 0.07
SCN1B-208ENST00000640135 ARID3CA6NKF2 412 aa15.5■□□□□ 0.07
SCN1B-208ENST00000640135 DAXXQ9UER7 740 aaPredicted RBP15.5■□□□□ 0.07
SCN1B-208ENST00000640135 ZNF326Q5BKZ1 582 aaKnown RBP15.47■□□□□ 0.07
SCN1B-208ENST00000640135 NEFMP07197 916 aa15.41■□□□□ 0.06
SCN1B-208ENST00000640135 BAZ1BQ9UIG0 1483 aaKnown RBP15.4■□□□□ 0.06
SCN1B-208ENST00000640135 STAG3Q9UJ98 1225 aa15.39■□□□□ 0.05
SCN1B-208ENST00000640135 TSPY4P0CV99 314 aa15.36■□□□□ 0.05
SCN1B-208ENST00000640135 TSPY10P0CW01 314 aa15.36■□□□□ 0.05
SCN1B-208ENST00000640135 ANP32CO43423 234 aa15.36■□□□□ 0.05
SCN1B-208ENST00000640135 EEA1Q15075 1411 aa15.35■□□□□ 0.05
SCN1B-208ENST00000640135 DIEXFQ68CQ4 756 aaKnown RBP15.34■□□□□ 0.05
SCN1B-208ENST00000640135 BAZ1AQ9NRL2 1556 aaPredicted RBP15.32■□□□□ 0.04
SCN1B-208ENST00000640135 RSF1Q96T23 1441 aaPredicted RBP15.31■□□□□ 0.04
SCN1B-208ENST00000640135 ACIN1Q9UKV3 1341 aaKnown RBP15.31■□□□□ 0.04
SCN1B-208ENST00000640135 MTUS2Q5JR59 1369 aa15.29■□□□□ 0.04
SCN1B-208ENST00000640135 CLSPNQ9HAW4 1339 aa15.28■□□□□ 0.04
SCN1B-208ENST00000640135 ERCC6Q03468 1493 aa15.28■□□□□ 0.04
SCN1B-208ENST00000640135 ZBTB47Q9UFB7 747 aaPredicted RBP15.27■□□□□ 0.04
SCN1B-208ENST00000640135 CHGAP10645 457 aaKnown RBP15.27■□□□□ 0.03
SCN1B-208ENST00000640135 PLEKHD1A6NEE1 506 aa15.26■□□□□ 0.03
SCN1B-208ENST00000640135 WRNQ14191 1432 aaPredicted RBP eCLIP15.23■□□□□ 0.03
SCN1B-208ENST00000640135 KIF27Q86VH2 1401 aa15.23■□□□□ 0.03
SCN1B-208ENST00000640135 TONSLQ96HA7 1378 aa15.22■□□□□ 0.03
SCN1B-208ENST00000640135 CLIP1P30622 1438 aa15.18■□□□□ 0.02
SCN1B-208ENST00000640135 ZNF316A6NFI3 1004 aaPredicted RBP15.17■□□□□ 0.02
SCN1B-208ENST00000640135 SLC24A1O60721 1099 aa15.15■□□□□ 0.02
SCN1B-208ENST00000640135 SMARCA2P51531 1590 aa15.15■□□□□ 0.02
SCN1B-208ENST00000640135 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.15■□□□□ 0.02
SCN1B-208ENST00000640135 GOLGA3Q08378 1498 aa15.14■□□□□ 0.01
SCN1B-208ENST00000640135 CHIC2Q9UKJ5 165 aa15.12■□□□□ 0.01
SCN1B-208ENST00000640135 CANXP27824 592 aaKnown RBP15.11■□□□□ 0.01
SCN1B-208ENST00000640135 CECR2Q9BXF3 1484 aa15.11■□□□□ 0.01
SCN1B-208ENST00000640135 KCNH8Q96L42 1107 aa15.11■□□□□ 0.01
SCN1B-208ENST00000640135 PLPPR3Q6T4P5 718 aa15.11■□□□□ 0.01
SCN1B-208ENST00000640135 PDS5BQ9NTI5 1447 aa15.08■□□□□ 0
SCN1B-208ENST00000640135 CEP164Q9UPV0 1460 aa15.05■□□□□ -0
SCN1B-208ENST00000640135 CFDP1Q9UEE9 299 aaPredicted RBP15.03■□□□□ -0
SCN1B-208ENST00000640135 PPP1R15AO75807 674 aaPredicted RBP15.01□□□□□ -0.01
SCN1B-208ENST00000640135 ARID4BQ4LE39 1312 aaPredicted RBP14.98□□□□□ -0.01
SCN1B-208ENST00000640135 TNIKQ9UKE5 1360 aa14.98□□□□□ -0.01
SCN1B-208ENST00000640135 FHAD1B1AJZ9 1412 aa14.95□□□□□ -0.02
SCN1B-208ENST00000640135 CEP162Q5TB80 1403 aa14.94□□□□□ -0.02
SCN1B-208ENST00000640135 MROH2BQ7Z745 1585 aa14.94□□□□□ -0.02
SCN1B-208ENST00000640135 CARMIL1Q5VZK9 1371 aa14.94□□□□□ -0.02
SCN1B-208ENST00000640135 RTL5Q5HYW3 569 aaPredicted RBP14.92□□□□□ -0.02
SCN1B-208ENST00000640135 KDM2AQ9Y2K7 1162 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms