RNA–Protein interactions for RNA: ENST00000639092.1

ARHGEF9-238, Transcript of Cdc42 guanine nucleotide exchange factor 9, human

TSL 5

Gene ARHGEF9, Length 4,657 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ARHGEF9-238	ENST00000639092	NISCH	Q9Y2I1	1504 aa		15.71	■□□□□ 0.1
ARHGEF9-238	ENST00000639092	DCAF8L2	P0C7V8	631 aa		15.02	■□□□□ -0
ARHGEF9-238	ENST00000639092	SUPT5H	O00267	1087 aa	Known RBP	14.16	□□□□□ -0.14
ARHGEF9-238	ENST00000639092	SHROOM4	Q9ULL8	1493 aa		13.94	□□□□□ -0.18
ARHGEF9-238	ENST00000639092	APLP2	Q06481	763 aa		13.53	□□□□□ -0.24
ARHGEF9-238	ENST00000639092	EHMT2	Q96KQ7	1210 aa		13.51	□□□□□ -0.25
ARHGEF9-238	ENST00000639092	FAM9A	Q8IZU1	332 aa	Predicted RBP	13.45	□□□□□ -0.26
ARHGEF9-238	ENST00000639092	CCDC180	Q9P1Z9	1646 aa		13.32	□□□□□ -0.28
ARHGEF9-238	ENST00000639092	TRIM41	Q8WV44	630 aa		13.21	□□□□□ -0.29
ARHGEF9-238	ENST00000639092	PELP1	Q8IZL8	1130 aa	Known RBP	13.19	□□□□□ -0.3
ARHGEF9-238	ENST00000639092	ABCC9	O60706	1549 aa		13.13	□□□□□ -0.31
ARHGEF9-238	ENST00000639092	ZCCHC6	Q5VYS8	1495 aa	Known RBP	13.07	□□□□□ -0.32
ARHGEF9-238	ENST00000639092	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.05	□□□□□ -0.32
ARHGEF9-238	ENST00000639092	UBTF	P17480	764 aa	Known RBP	13.04	□□□□□ -0.32
ARHGEF9-238	ENST00000639092	RANGAP1	P46060	587 aa	Predicted RBP	13.03	□□□□□ -0.32
ARHGEF9-238	ENST00000639092	PCGF6	Q9BYE7	350 aa		13.02	□□□□□ -0.33
ARHGEF9-238	ENST00000639092	ATP1B4	Q9UN42	357 aa	Predicted RBP	13	□□□□□ -0.33
ARHGEF9-238	ENST00000639092	ZEB1	P37275	1124 aa	Predicted RBP	12.96	□□□□□ -0.33
ARHGEF9-238	ENST00000639092	CCER1	Q8TC90	406 aa	Predicted RBP	12.89	□□□□□ -0.35
ARHGEF9-238	ENST00000639092	DCAF1	Q9Y4B6	1507 aa		12.81	□□□□□ -0.36
ARHGEF9-238	ENST00000639092	CHIC1	Q5VXU3	224 aa		12.79	□□□□□ -0.36
ARHGEF9-238	ENST00000639092	NACAD	O15069	1562 aa		12.79	□□□□□ -0.36
ARHGEF9-238	ENST00000639092	CENPB	P07199	599 aa	Predicted RBP	12.77	□□□□□ -0.36
ARHGEF9-238	ENST00000639092	RB1CC1	Q8TDY2	1594 aa		12.77	□□□□□ -0.36
ARHGEF9-238	ENST00000639092	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.72	□□□□□ -0.37
ARHGEF9-238	ENST00000639092	SCRIB	Q14160	1630 aa		12.67	□□□□□ -0.38
ARHGEF9-238	ENST00000639092	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.63	□□□□□ -0.39
ARHGEF9-238	ENST00000639092	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.63	□□□□□ -0.39
ARHGEF9-238	ENST00000639092	TRIM26	Q12899	539 aa	Predicted RBP	12.62	□□□□□ -0.39
ARHGEF9-238	ENST00000639092	MYO15B	Q96JP2	1530 aa		12.59	□□□□□ -0.39
ARHGEF9-238	ENST00000639092	PPARGC1B	Q86YN6	1023 aa	Known RBP	12.57	□□□□□ -0.4
ARHGEF9-238	ENST00000639092	MYT1L	Q9UL68	1186 aa		12.56	□□□□□ -0.4
ARHGEF9-238	ENST00000639092	NEFL	P07196	543 aa		12.55	□□□□□ -0.4
ARHGEF9-238	ENST00000639092	ITGAE	P38570	1179 aa		12.5	□□□□□ -0.41
ARHGEF9-238	ENST00000639092	ERICH6	Q7L0X2	663 aa		12.5	□□□□□ -0.41
ARHGEF9-238	ENST00000639092	LOC105371045	A0A1W2PR82	267 aa		12.48	□□□□□ -0.41
ARHGEF9-238	ENST00000639092	YTHDC1	Q96MU7	727 aa	Known RBP	12.38	□□□□□ -0.43
ARHGEF9-238	ENST00000639092	RSF1	Q96T23	1441 aa	Predicted RBP	12.37	□□□□□ -0.43
ARHGEF9-238	ENST00000639092	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	12.36	□□□□□ -0.43
ARHGEF9-238	ENST00000639092	CSRNP3	Q8WYN3	585 aa		12.35	□□□□□ -0.43
ARHGEF9-238	ENST00000639092	POLR3GL	Q9BT43	218 aa		12.34	□□□□□ -0.43
ARHGEF9-238	ENST00000639092	HRC	P23327	699 aa		12.33	□□□□□ -0.44
ARHGEF9-238	ENST00000639092	EEA1	Q15075	1411 aa		12.28	□□□□□ -0.44
ARHGEF9-238	ENST00000639092	FAM50A	Q14320	339 aa	Known RBP	12.28	□□□□□ -0.44
ARHGEF9-238	ENST00000639092	BAZ1B	Q9UIG0	1483 aa	Known RBP	12.24	□□□□□ -0.45
ARHGEF9-238	ENST00000639092	FBLN2	P98095	1184 aa		12.21	□□□□□ -0.45
ARHGEF9-238	ENST00000639092	TRIM52	Q96A61	297 aa		12.2	□□□□□ -0.46
ARHGEF9-238	ENST00000639092	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.15	□□□□□ -0.46
ARHGEF9-238	ENST00000639092	SMARCA2	P51531	1590 aa		12.14	□□□□□ -0.47
ARHGEF9-238	ENST00000639092	DAXX	Q9UER7	740 aa	Predicted RBP	12.12	□□□□□ -0.47
ARHGEF9-238	ENST00000639092	CNGB1	Q14028	1251 aa	Predicted RBP	12.12	□□□□□ -0.47
ARHGEF9-238	ENST00000639092	CDK11A	Q9UQ88	783 aa	Predicted RBP	12.11	□□□□□ -0.47
ARHGEF9-238	ENST00000639092	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.09	□□□□□ -0.47
ARHGEF9-238	ENST00000639092	CECR2	Q9BXF3	1484 aa		12.08	□□□□□ -0.48
ARHGEF9-238	ENST00000639092	DIEXF	Q68CQ4	756 aa	Known RBP	12.06	□□□□□ -0.48
ARHGEF9-238	ENST00000639092	NEUROD1	Q13562	356 aa		12.05	□□□□□ -0.48
ARHGEF9-238	ENST00000639092	P3H3	Q8IVL6	736 aa		12.02	□□□□□ -0.48
ARHGEF9-238	ENST00000639092	KIF27	Q86VH2	1401 aa		12.02	□□□□□ -0.49
ARHGEF9-238	ENST00000639092	GOLGA3	Q08378	1498 aa		12.02	□□□□□ -0.49
ARHGEF9-238	ENST00000639092	MROH2B	Q7Z745	1585 aa		12.01	□□□□□ -0.49
ARHGEF9-238	ENST00000639092	ACIN1	Q9UKV3	1341 aa	Known RBP	12	□□□□□ -0.49
ARHGEF9-238	ENST00000639092	ZNF326	Q5BKZ1	582 aa	Known RBP	11.99	□□□□□ -0.49
ARHGEF9-238	ENST00000639092	TOP2A	P11388	1531 aa	Known RBP	11.99	□□□□□ -0.49
ARHGEF9-238	ENST00000639092	MYT1	Q01538	1121 aa		11.99	□□□□□ -0.49
ARHGEF9-238	ENST00000639092	CEP164	Q9UPV0	1460 aa		11.97	□□□□□ -0.49
ARHGEF9-238	ENST00000639092	ANP32C	O43423	234 aa		11.96	□□□□□ -0.5
ARHGEF9-238	ENST00000639092	TNIK	Q9UKE5	1360 aa		11.95	□□□□□ -0.5
ARHGEF9-238	ENST00000639092	ARID3C	A6NKF2	412 aa		11.95	□□□□□ -0.5
ARHGEF9-238	ENST00000639092	CLIP1	P30622	1438 aa		11.94	□□□□□ -0.5
ARHGEF9-238	ENST00000639092	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.93	□□□□□ -0.5
ARHGEF9-238	ENST00000639092	CLSPN	Q9HAW4	1339 aa		11.93	□□□□□ -0.5
ARHGEF9-238	ENST00000639092	NPM1	P06748	294 aa	Known RBP eCLIP	11.92	□□□□□ -0.5
ARHGEF9-238	ENST00000639092	CCDC88B	A6NC98	1476 aa		11.92	□□□□□ -0.5
ARHGEF9-238	ENST00000639092	SMARCA4	P51532	1647 aa		11.9	□□□□□ -0.5
ARHGEF9-238	ENST00000639092	PDS5B	Q9NTI5	1447 aa		11.89	□□□□□ -0.51
ARHGEF9-238	ENST00000639092	ESF1	Q9H501	851 aa	Known RBP	11.89	□□□□□ -0.51
ARHGEF9-238	ENST00000639092	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.88	□□□□□ -0.51
ARHGEF9-238	ENST00000639092	ATAD2B	Q9ULI0	1458 aa		11.88	□□□□□ -0.51
ARHGEF9-238	ENST00000639092	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.87	□□□□□ -0.51
ARHGEF9-238	ENST00000639092	NEFM	P07197	916 aa		11.86	□□□□□ -0.51
ARHGEF9-238	ENST00000639092	BCAN	Q96GW7	911 aa		11.86	□□□□□ -0.51
ARHGEF9-238	ENST00000639092	CEP162	Q5TB80	1403 aa		11.84	□□□□□ -0.51
ARHGEF9-238	ENST00000639092	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.83	□□□□□ -0.52
ARHGEF9-238	ENST00000639092	CADPS	Q9ULU8	1353 aa		11.82	□□□□□ -0.52
ARHGEF9-238	ENST00000639092	ERCC6	Q03468	1493 aa		11.81	□□□□□ -0.52
ARHGEF9-238	ENST00000639092	MTUS2	Q5JR59	1369 aa		11.81	□□□□□ -0.52
ARHGEF9-238	ENST00000639092	WIZ	O95785	1651 aa		11.8	□□□□□ -0.52
ARHGEF9-238	ENST00000639092	TONSL	Q96HA7	1378 aa		11.8	□□□□□ -0.52
ARHGEF9-238	ENST00000639092	ABCC8	Q09428	1581 aa		11.79	□□□□□ -0.52
ARHGEF9-238	ENST00000639092	FHAD1	B1AJZ9	1412 aa		11.79	□□□□□ -0.52
ARHGEF9-238	ENST00000639092	TSPY4	P0CV99	314 aa		11.77	□□□□□ -0.53
ARHGEF9-238	ENST00000639092	TSPY10	P0CW01	314 aa		11.77	□□□□□ -0.53
ARHGEF9-238	ENST00000639092	RTL5	Q5HYW3	569 aa	Predicted RBP	11.77	□□□□□ -0.53
ARHGEF9-238	ENST00000639092	STAG3	Q9UJ98	1225 aa		11.77	□□□□□ -0.53
ARHGEF9-238	ENST00000639092	CARMIL1	Q5VZK9	1371 aa		11.76	□□□□□ -0.53
ARHGEF9-238	ENST00000639092	NCAPD3	P42695	1498 aa		11.76	□□□□□ -0.53
ARHGEF9-238	ENST00000639092	CUX2	O14529	1486 aa		11.75	□□□□□ -0.53
ARHGEF9-238	ENST00000639092	CHGA	P10645	457 aa	Known RBP	11.74	□□□□□ -0.53
ARHGEF9-238	ENST00000639092	CANX	P27824	592 aa	Known RBP	11.74	□□□□□ -0.53
ARHGEF9-238	ENST00000639092	PLEKHD1	A6NEE1	506 aa		11.7	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms