RNA–Protein interactions for RNA: ENST00000606296.1

SATB1-218, Transcript of SATB homeobox 1, humanhuman

Gene SATB1, Length 4,200 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SATB1-218ENST00000606296 NISCHQ9Y2I1 1504 aa13.66□□□□□ -0.22
SATB1-218ENST00000606296 SHROOM4Q9ULL8 1493 aa12.71□□□□□ -0.37
SATB1-218ENST00000606296 SUPT5HO00267 1087 aaKnown RBP12.69□□□□□ -0.38
SATB1-218ENST00000606296 DCAF8L2P0C7V8 631 aa12.69□□□□□ -0.38
SATB1-218ENST00000606296 PCGF6Q9BYE7 350 aa12.12□□□□□ -0.47
SATB1-218ENST00000606296 EHMT2Q96KQ7 1210 aa12.05□□□□□ -0.48
SATB1-218ENST00000606296 CHIC1Q5VXU3 224 aa11.89□□□□□ -0.51
SATB1-218ENST00000606296 FAM9AQ8IZU1 332 aaPredicted RBP11.87□□□□□ -0.51
SATB1-218ENST00000606296 HRCP23327 699 aa11.84□□□□□ -0.51
SATB1-218ENST00000606296 PPARGC1BQ86YN6 1023 aaKnown RBP11.83□□□□□ -0.52
SATB1-218ENST00000606296 LOC105371045A0A1W2PR82 267 aa11.83□□□□□ -0.52
SATB1-218ENST00000606296 TTBK1Q5TCY1 1321 aaPredicted RBP11.65□□□□□ -0.54
SATB1-218ENST00000606296 TRIM41Q8WV44 630 aa11.63□□□□□ -0.55
SATB1-218ENST00000606296 MYO15BQ96JP2 1530 aa11.57□□□□□ -0.56
SATB1-218ENST00000606296 TRIM26Q12899 539 aaPredicted RBP11.56□□□□□ -0.56
SATB1-218ENST00000606296 ZCCHC6Q5VYS8 1495 aaKnown RBP11.46□□□□□ -0.57
SATB1-218ENST00000606296 CCER1Q8TC90 406 aaPredicted RBP11.42□□□□□ -0.58
SATB1-218ENST00000606296 ZEB1P37275 1124 aaPredicted RBP11.41□□□□□ -0.58
SATB1-218ENST00000606296 RANGAP1P46060 587 aaPredicted RBP11.33□□□□□ -0.6
SATB1-218ENST00000606296 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.31□□□□□ -0.6
SATB1-218ENST00000606296 UBTFP17480 764 aaKnown RBP11.25□□□□□ -0.61
SATB1-218ENST00000606296 YTHDC1Q96MU7 727 aaKnown RBP11.24□□□□□ -0.61
SATB1-218ENST00000606296 DCAF1Q9Y4B6 1507 aa11.22□□□□□ -0.61
SATB1-218ENST00000606296 CENPBP07199 599 aaPredicted RBP11.17□□□□□ -0.62
SATB1-218ENST00000606296 APLP2Q06481 763 aa11.17□□□□□ -0.62
SATB1-218ENST00000606296 CCDC180Q9P1Z9 1646 aa11.15□□□□□ -0.62
SATB1-218ENST00000606296 ABCC9O60706 1549 aa11.11□□□□□ -0.63
SATB1-218ENST00000606296 PELP1Q8IZL8 1130 aaKnown RBP11.11□□□□□ -0.63
SATB1-218ENST00000606296 HNRNPUL2Q1KMD3 747 aaKnown RBP11.11□□□□□ -0.63
SATB1-218ENST00000606296 SCRIBQ14160 1630 aa11.1□□□□□ -0.63
SATB1-218ENST00000606296 DIEXFQ68CQ4 756 aaKnown RBP11.09□□□□□ -0.63
SATB1-218ENST00000606296 SCAF1Q9H7N4 1312 aaKnown RBP11.05□□□□□ -0.64
SATB1-218ENST00000606296 RSF1Q96T23 1441 aaPredicted RBP11.02□□□□□ -0.64
SATB1-218ENST00000606296 GTF3C3Q9Y5Q9 886 aa11.02□□□□□ -0.64
SATB1-218ENST00000606296 NEUROD1Q13562 356 aa10.96□□□□□ -0.65
SATB1-218ENST00000606296 ACIN1Q9UKV3 1341 aaKnown RBP10.96□□□□□ -0.66
SATB1-218ENST00000606296 PABPN1Q86U42 306 aaKnown RBP eCLIP10.96□□□□□ -0.66
SATB1-218ENST00000606296 ITGAEP38570 1179 aa10.94□□□□□ -0.66
SATB1-218ENST00000606296 ATP1B4Q9UN42 357 aaPredicted RBP10.9□□□□□ -0.66
SATB1-218ENST00000606296 RB1CC1Q8TDY2 1594 aa10.86□□□□□ -0.67
SATB1-218ENST00000606296 CSRNP3Q8WYN3 585 aa10.86□□□□□ -0.67
SATB1-218ENST00000606296 CECR2Q9BXF3 1484 aa10.86□□□□□ -0.67
SATB1-218ENST00000606296 ZNF316A6NFI3 1004 aaPredicted RBP10.85□□□□□ -0.67
SATB1-218ENST00000606296 MIER1Q8N108 512 aa10.75□□□□□ -0.69
SATB1-218ENST00000606296 MROH2BQ7Z745 1585 aa10.73□□□□□ -0.69
SATB1-218ENST00000606296 CEP162Q5TB80 1403 aa10.72□□□□□ -0.69
SATB1-218ENST00000606296 BCANQ96GW7 911 aa10.69□□□□□ -0.7
SATB1-218ENST00000606296 SOGA1O94964 1423 aa10.68□□□□□ -0.7
SATB1-218ENST00000606296 ABCC8Q09428 1581 aa10.66□□□□□ -0.7
SATB1-218ENST00000606296 CCDC88BA6NC98 1476 aa10.64□□□□□ -0.71
SATB1-218ENST00000606296 WIZO95785 1651 aa10.63□□□□□ -0.71
SATB1-218ENST00000606296 FAM50AQ14320 339 aaKnown RBP10.63□□□□□ -0.71
SATB1-218ENST00000606296 NEFLP07196 543 aa10.61□□□□□ -0.71
SATB1-218ENST00000606296 MYT1Q01538 1121 aa10.61□□□□□ -0.71
SATB1-218ENST00000606296 P3H3Q8IVL6 736 aa10.59□□□□□ -0.71
SATB1-218ENST00000606296 TNIKQ9UKE5 1360 aa10.59□□□□□ -0.71
SATB1-218ENST00000606296 CLIP1P30622 1438 aa10.58□□□□□ -0.72
SATB1-218ENST00000606296 CNGB1Q14028 1251 aaPredicted RBP10.58□□□□□ -0.72
SATB1-218ENST00000606296 NACADO15069 1562 aa10.56□□□□□ -0.72
SATB1-218ENST00000606296 RUSC2Q8N2Y8 1516 aa10.55□□□□□ -0.72
SATB1-218ENST00000606296 GOLGA3Q08378 1498 aa10.53□□□□□ -0.72
SATB1-218ENST00000606296 HIRIP3Q9BW71 556 aaPredicted RBP10.53□□□□□ -0.72
SATB1-218ENST00000606296 WRNQ14191 1432 aaPredicted RBP eCLIP10.53□□□□□ -0.72
SATB1-218ENST00000606296 BAZ1AQ9NRL2 1556 aaPredicted RBP10.52□□□□□ -0.73
SATB1-218ENST00000606296 DDX10Q13206 875 aaKnown RBP10.51□□□□□ -0.73
SATB1-218ENST00000606296 ERICH6Q7L0X2 663 aa10.5□□□□□ -0.73
SATB1-218ENST00000606296 POLR3GLQ9BT43 218 aa10.47□□□□□ -0.73
SATB1-218ENST00000606296 EEA1Q15075 1411 aa10.47□□□□□ -0.73
SATB1-218ENST00000606296 FKBP8Q14318 412 aa10.45□□□□□ -0.74
SATB1-218ENST00000606296 TRIM52Q96A61 297 aa10.44□□□□□ -0.74
SATB1-218ENST00000606296 KANK4Q5T7N3 995 aaPredicted RBP10.44□□□□□ -0.74
SATB1-218ENST00000606296 CEP164Q9UPV0 1460 aa10.43□□□□□ -0.74
SATB1-218ENST00000606296 ARID3CA6NKF2 412 aa10.41□□□□□ -0.74
SATB1-218ENST00000606296 ANP32CO43423 234 aa10.41□□□□□ -0.74
SATB1-218ENST00000606296 SIN3AQ96ST3 1273 aa10.39□□□□□ -0.75
SATB1-218ENST00000606296 SUPT16HQ9Y5B9 1047 aaKnown RBP10.38□□□□□ -0.75
SATB1-218ENST00000606296 TOP2AP11388 1531 aaKnown RBP10.37□□□□□ -0.75
SATB1-218ENST00000606296 VPS8Q8N3P4 1428 aa10.37□□□□□ -0.75
SATB1-218ENST00000606296 KCNH8Q96L42 1107 aa10.36□□□□□ -0.75
SATB1-218ENST00000606296 RAPGEF2Q9Y4G8 1499 aa10.35□□□□□ -0.75
SATB1-218ENST00000606296 IRX6P78412 446 aaPredicted RBP10.34□□□□□ -0.75
SATB1-218ENST00000606296 BAZ1BQ9UIG0 1483 aaKnown RBP10.34□□□□□ -0.75
SATB1-218ENST00000606296 SMARCA2P51531 1590 aa10.31□□□□□ -0.76
SATB1-218ENST00000606296 SMARCA4P51532 1647 aa10.31□□□□□ -0.76
SATB1-218ENST00000606296 CHIC2Q9UKJ5 165 aa10.31□□□□□ -0.76
SATB1-218ENST00000606296 HNRNPUQ00839 825 aaKnown RBP eCLIP10.3□□□□□ -0.76
SATB1-218ENST00000606296 ZNF326Q5BKZ1 582 aaKnown RBP10.3□□□□□ -0.76
SATB1-218ENST00000606296 TONSLQ96HA7 1378 aa10.28□□□□□ -0.76
SATB1-218ENST00000606296 CCNB3Q8WWL7 1395 aa10.28□□□□□ -0.76
SATB1-218ENST00000606296 DHX57Q6P158 1386 aaKnown RBP10.27□□□□□ -0.77
SATB1-218ENST00000606296 SENP3-EIF4A1A0A087X0R7 540 aa10.27□□□□□ -0.77
SATB1-218ENST00000606296 CLSPNQ9HAW4 1339 aa10.26□□□□□ -0.77
SATB1-218ENST00000606296 KIF27Q86VH2 1401 aa10.25□□□□□ -0.77
SATB1-218ENST00000606296 FAM9BQ8IZU0 186 aa10.25□□□□□ -0.77
SATB1-218ENST00000606296 CDK11AQ9UQ88 783 aaPredicted RBP10.24□□□□□ -0.77
SATB1-218ENST00000606296 RRP7BPQ9NSQ0 103 aa10.22□□□□□ -0.77
SATB1-218ENST00000606296 RAB3GAP2Q9H2M9 1393 aa10.22□□□□□ -0.77
SATB1-218ENST00000606296 TSHZ2Q9NRE2 1034 aa10.22□□□□□ -0.77
SATB1-218ENST00000606296 ANP32EQ9BTT0 268 aa10.18□□□□□ -0.78
SATB1-218ENST00000606296 MTUS2Q5JR59 1369 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms