RNA–Protein interactions for RNA: ENST00000602861.5

HCG18-248, Transcript of HLA complex group 18, humanhuman

TSL 3

Gene HCG18, Length 372 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCG18-248ENST00000602861 CHIC1Q5VXU3 224 aa22.02■■□□□ 1.12
HCG18-248ENST00000602861 AEBP2Q6ZN18 517 aaPredicted RBP21.95■■□□□ 1.1
HCG18-248ENST00000602861 PHF23Q9BUL5 403 aaPredicted RBP19.44■□□□□ 0.7
HCG18-248ENST00000602861 SENP3Q9H4L4 574 aaPredicted RBP18.55■□□□□ 0.56
HCG18-248ENST00000602861 PLPPR3Q6T4P5 718 aa18.17■□□□□ 0.5
HCG18-248ENST00000602861 NISCHQ9Y2I1 1504 aa17.67■□□□□ 0.42
HCG18-248ENST00000602861 FOXD1Q16676 465 aa17.13■□□□□ 0.33
HCG18-248ENST00000602861 ADRA2BP18089 450 aa17■□□□□ 0.31
HCG18-248ENST00000602861 PPP6R1Q9UPN7 881 aa16.95■□□□□ 0.3
HCG18-248ENST00000602861 KCNA4P22459 653 aa16.39■□□□□ 0.21
HCG18-248ENST00000602861 PIAS4Q8N2W9 510 aaPredicted RBP16.33■□□□□ 0.2
HCG18-248ENST00000602861 POTEDQ86YR6 584 aa16.21■□□□□ 0.19
HCG18-248ENST00000602861 PPP4R3CPQ6ZMV5 832 aa16.1■□□□□ 0.17
HCG18-248ENST00000602861 ABCC9O60706 1549 aa16■□□□□ 0.15
HCG18-248ENST00000602861 EHMT2Q96KQ7 1210 aa15.99■□□□□ 0.15
HCG18-248ENST00000602861 CCDC180Q9P1Z9 1646 aa15.9■□□□□ 0.14
HCG18-248ENST00000602861 NCBP3Q53F19 620 aaKnown RBP15.86■□□□□ 0.13
HCG18-248ENST00000602861 SLC4A1APQ9BWU0 796 aaKnown RBP15.73■□□□□ 0.11
HCG18-248ENST00000602861 NPM3O75607 178 aaKnown RBP15.61■□□□□ 0.09
HCG18-248ENST00000602861 MSH5O43196 834 aa15.58■□□□□ 0.08
HCG18-248ENST00000602861 SCAF1Q9H7N4 1312 aaKnown RBP15.57■□□□□ 0.08
HCG18-248ENST00000602861 CNKSR2Q8WXI2 1034 aa15.51■□□□□ 0.07
HCG18-248ENST00000602861 CSRNP3Q8WYN3 585 aa15.49■□□□□ 0.07
HCG18-248ENST00000602861 MAPK8IP2Q13387 824 aaPredicted RBP15.24■□□□□ 0.03
HCG18-248ENST00000602861 RB1CC1Q8TDY2 1594 aa15.18■□□□□ 0.02
HCG18-248ENST00000602861 ZBTB22O15209 634 aa15.06■□□□□ 0
HCG18-248ENST00000602861 RNF216Q9NWF9 866 aaPredicted RBP15.05■□□□□ -0
HCG18-248ENST00000602861 NACADO15069 1562 aa15.04■□□□□ -0
HCG18-248ENST00000602861 DNAJC5BQ9UF47 199 aa15.01□□□□□ -0.01
HCG18-248ENST00000602861 DCAF8L2P0C7V8 631 aa14.96□□□□□ -0.01
HCG18-248ENST00000602861 FOXD4L1Q9NU39 408 aa14.92□□□□□ -0.02
HCG18-248ENST00000602861 DMRT2Q9Y5R5 561 aa14.89□□□□□ -0.03
HCG18-248ENST00000602861 PABPN1Q86U42 306 aaKnown RBP eCLIP14.86□□□□□ -0.03
HCG18-248ENST00000602861 HOXD11P31277 338 aaPredicted RBP14.82□□□□□ -0.04
HCG18-248ENST00000602861 MYO15BQ96JP2 1530 aa14.8□□□□□ -0.04
HCG18-248ENST00000602861 UNC13AQ9UPW8 1703 aa14.76□□□□□ -0.05
HCG18-248ENST00000602861 BICRAQ9NZM4 1560 aa14.72□□□□□ -0.05
HCG18-248ENST00000602861 ZCCHC6Q5VYS8 1495 aaKnown RBP14.65□□□□□ -0.06
HCG18-248ENST00000602861 DCAF1Q9Y4B6 1507 aa14.58□□□□□ -0.08
HCG18-248ENST00000602861 SLC4A2P04920 1241 aa14.57□□□□□ -0.08
HCG18-248ENST00000602861 SHROOM4Q9ULL8 1493 aa14.55□□□□□ -0.08
HCG18-248ENST00000602861 SCRIBQ14160 1630 aa14.52□□□□□ -0.09
HCG18-248ENST00000602861 CC2D2AQ9P2K1 1620 aa14.42□□□□□ -0.1
HCG18-248ENST00000602861 CECR2Q9BXF3 1484 aa14.42□□□□□ -0.1
HCG18-248ENST00000602861 MYCNP04198 464 aaPredicted RBP14.41□□□□□ -0.1
HCG18-248ENST00000602861 EIF4G1Q04637 1599 aaKnown RBP14.39□□□□□ -0.11
HCG18-248ENST00000602861 ATXN8OSP0DMR3 200 aa14.33□□□□□ -0.12
HCG18-248ENST00000602861 DCAF8L1A6NGE4 600 aa14.28□□□□□ -0.12
HCG18-248ENST00000602861 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.16□□□□□ -0.142e-6■■□□□ 11.6
HCG18-248ENST00000602861 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.01□□□□□ -0.17
HCG18-248ENST00000602861 HNRNPUL2Q1KMD3 747 aaKnown RBP14.01□□□□□ -0.17
HCG18-248ENST00000602861 FKBP8Q14318 412 aa14□□□□□ -0.17
HCG18-248ENST00000602861 SAMD1Q6SPF0 538 aaPredicted RBP13.98□□□□□ -0.17
HCG18-248ENST00000602861 ATF5Q9Y2D1 282 aaPredicted RBP13.97□□□□□ -0.17
HCG18-248ENST00000602861 U3KPZ7 1027 aaPredicted RBP13.97□□□□□ -0.17
HCG18-248ENST00000602861 NCAPD3P42695 1498 aa13.88□□□□□ -0.19
HCG18-248ENST00000602861 DNAJC5Q9H3Z4 198 aa13.85□□□□□ -0.19
HCG18-248ENST00000602861 ERCC6Q03468 1493 aa13.85□□□□□ -0.19
HCG18-248ENST00000602861 ATAD2BQ9ULI0 1458 aa13.84□□□□□ -0.19
HCG18-248ENST00000602861 SMARCA2P51531 1590 aa13.82□□□□□ -0.2
HCG18-248ENST00000602861 CUX2O14529 1486 aa13.81□□□□□ -0.2
HCG18-248ENST00000602861 AMER1Q5JTC6 1135 aaPredicted RBP13.81□□□□□ -0.2
HCG18-248ENST00000602861 SMARCA4P51532 1647 aa13.81□□□□□ -0.2
HCG18-248ENST00000602861 CACNB1Q02641 598 aaPredicted RBP13.8□□□□□ -0.2
HCG18-248ENST00000602861 HMGXB3Q12766 1538 aa13.8□□□□□ -0.2
HCG18-248ENST00000602861 RTN4Q9NQC3 1192 aaKnown RBP13.77□□□□□ -0.21
HCG18-248ENST00000602861 APLP2Q06481 763 aa13.74□□□□□ -0.21
HCG18-248ENST00000602861 BAZ1AQ9NRL2 1556 aaPredicted RBP13.74□□□□□ -0.21
HCG18-248ENST00000602861 BAZ1BQ9UIG0 1483 aaKnown RBP13.73□□□□□ -0.21
HCG18-248ENST00000602861 NESP48681 1621 aa13.71□□□□□ -0.22
HCG18-248ENST00000602861 ZNF219Q9P2Y4 722 aaPredicted RBP13.7□□□□□ -0.22
HCG18-248ENST00000602861 PEG3Q9GZU2 1588 aa13.66□□□□□ -0.22
HCG18-248ENST00000602861 MROH2BQ7Z745 1585 aa13.62□□□□□ -0.23
HCG18-248ENST00000602861 THOC2Q8NI27 1593 aaKnown RBP13.59□□□□□ -0.23
HCG18-248ENST00000602861 LAMC3Q9Y6N6 1575 aa13.59□□□□□ -0.23
HCG18-248ENST00000602861 PDS5BQ9NTI5 1447 aa13.53□□□□□ -0.24
HCG18-248ENST00000602861 KIF21AQ7Z4S6 1674 aa13.51□□□□□ -0.25
HCG18-248ENST00000602861 SUPT5HO00267 1087 aaKnown RBP13.49□□□□□ -0.25
HCG18-248ENST00000602861 CADPSQ9ULU8 1353 aa13.46□□□□□ -0.25
HCG18-248ENST00000602861 TRHP20396 242 aaPredicted RBP13.44□□□□□ -0.26
HCG18-248ENST00000602861 WIZO95785 1651 aa13.44□□□□□ -0.26
HCG18-248ENST00000602861 MRC2Q9UBG0 1479 aa13.43□□□□□ -0.26
HCG18-248ENST00000602861 SLC24A1O60721 1099 aa13.43□□□□□ -0.26
HCG18-248ENST00000602861 SPDYE4A6NLX3 237 aa13.41□□□□□ -0.26
HCG18-248ENST00000602861 SPINK5Q9NQ38 1064 aaPredicted RBP13.41□□□□□ -0.26
HCG18-248ENST00000602861 WDR62O43379 1518 aa13.39□□□□□ -0.27
HCG18-248ENST00000602861 MKRN4PQ13434 485 aaPredicted RBP13.39□□□□□ -0.27
HCG18-248ENST00000602861 RNF39Q9H2S5 420 aa13.39□□□□□ -0.27
HCG18-248ENST00000602861 FBLN2P98095 1184 aa13.38□□□□□ -0.27
HCG18-248ENST00000602861 CAPN15O75808 1086 aa13.37□□□□□ -0.27
HCG18-248ENST00000602861 CEP164Q9UPV0 1460 aa13.36□□□□□ -0.27
HCG18-248ENST00000602861 POLA2Q14181 598 aa13.35□□□□□ -0.27
HCG18-248ENST00000602861 FBXO3Q9UK99 471 aa13.34□□□□□ -0.27
HCG18-248ENST00000602861 FANCD2Q9BXW9 1451 aa13.33□□□□□ -0.28
HCG18-248ENST00000602861 RSF1Q96T23 1441 aaPredicted RBP13.3□□□□□ -0.28
HCG18-248ENST00000602861 TOP2AP11388 1531 aaKnown RBP13.3□□□□□ -0.28
HCG18-248ENST00000602861 CFTRP13569 1480 aa13.29□□□□□ -0.28
HCG18-248ENST00000602861 C1QBPQ07021 282 aaKnown RBP13.28□□□□□ -0.28
HCG18-248ENST00000602861 TRIM41Q8WV44 630 aa13.27□□□□□ -0.29
HCG18-248ENST00000602861 PROM2Q8N271 834 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms