RNA–Protein interactions for RNA: ENST00000588656.1

CHUK-203, Transcript of conserved helix-loop-helix ubiquitous kinase, humanhuman

TSL 3

Gene CHUK, Length 675 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHUK-203ENST00000588656 AEBP2Q6ZN18 517 aaPredicted RBP21.43■■□□□ 1.02
CHUK-203ENST00000588656 CHIC1Q5VXU3 224 aa20.44■□□□□ 0.86
CHUK-203ENST00000588656 SENP3Q9H4L4 574 aaPredicted RBP18.36■□□□□ 0.53
CHUK-203ENST00000588656 PHF23Q9BUL5 403 aaPredicted RBP18.12■□□□□ 0.49
CHUK-203ENST00000588656 FOXD1Q16676 465 aa17.07■□□□□ 0.32
CHUK-203ENST00000588656 PLPPR3Q6T4P5 718 aa16.38■□□□□ 0.21
CHUK-203ENST00000588656 MSH5O43196 834 aa16.02■□□□□ 0.16
CHUK-203ENST00000588656 PIAS4Q8N2W9 510 aaPredicted RBP15.96■□□□□ 0.15
CHUK-203ENST00000588656 PPP6R1Q9UPN7 881 aa15.96■□□□□ 0.15
CHUK-203ENST00000588656 ADRA2BP18089 450 aa15.92■□□□□ 0.14
CHUK-203ENST00000588656 POTEDQ86YR6 584 aa15.52■□□□□ 0.08
CHUK-203ENST00000588656 SCAF1Q9H7N4 1312 aaKnown RBP14.69□□□□□ -0.06
CHUK-203ENST00000588656 MAPK8IP2Q13387 824 aaPredicted RBP14.6□□□□□ -0.07
CHUK-203ENST00000588656 DMRT2Q9Y5R5 561 aa14.55□□□□□ -0.08
CHUK-203ENST00000588656 PPP4R3CPQ6ZMV5 832 aa14.34□□□□□ -0.11
CHUK-203ENST00000588656 NISCHQ9Y2I1 1504 aa14.14□□□□□ -0.15
CHUK-203ENST00000588656 CNKSR2Q8WXI2 1034 aa14.09□□□□□ -0.15
CHUK-203ENST00000588656 HOXD11P31277 338 aaPredicted RBP14.03□□□□□ -0.16
CHUK-203ENST00000588656 RNF216Q9NWF9 866 aaPredicted RBP13.96□□□□□ -0.17
CHUK-203ENST00000588656 DCAF8L1A6NGE4 600 aa13.95□□□□□ -0.18
CHUK-203ENST00000588656 NCBP3Q53F19 620 aaKnown RBP13.87□□□□□ -0.19
CHUK-203ENST00000588656 CACNB1Q02641 598 aaPredicted RBP13.71□□□□□ -0.21
CHUK-203ENST00000588656 RNF39Q9H2S5 420 aa13.63□□□□□ -0.23
CHUK-203ENST00000588656 DNAJC5BQ9UF47 199 aa13.6□□□□□ -0.23
CHUK-203ENST00000588656 NPM3O75607 178 aaKnown RBP13.57□□□□□ -0.24
CHUK-203ENST00000588656 C1QBPQ07021 282 aaKnown RBP13.49□□□□□ -0.25
CHUK-203ENST00000588656 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.39□□□□□ -0.27
CHUK-203ENST00000588656 KCNA4P22459 653 aa13.32□□□□□ -0.28
CHUK-203ENST00000588656 U3KPZ7 1027 aaPredicted RBP13.05□□□□□ -0.32
CHUK-203ENST00000588656 ABCC9O60706 1549 aa12.98□□□□□ -0.33
CHUK-203ENST00000588656 SLC4A2P04920 1241 aa12.94□□□□□ -0.34
CHUK-203ENST00000588656 CAPN15O75808 1086 aa12.87□□□□□ -0.35
CHUK-203ENST00000588656 SPINK5Q9NQ38 1064 aaPredicted RBP12.85□□□□□ -0.35
CHUK-203ENST00000588656 APLP2Q06481 763 aa12.82□□□□□ -0.36
CHUK-203ENST00000588656 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.8□□□□□ -0.36
CHUK-203ENST00000588656 HNRNPUL2Q1KMD3 747 aaKnown RBP12.8□□□□□ -0.36
CHUK-203ENST00000588656 DSG3P32926 999 aa12.78□□□□□ -0.36
CHUK-203ENST00000588656 CCDC180Q9P1Z9 1646 aa12.77□□□□□ -0.36
CHUK-203ENST00000588656 SAMD1Q6SPF0 538 aaPredicted RBP12.7□□□□□ -0.38
CHUK-203ENST00000588656 ZNF219Q9P2Y4 722 aaPredicted RBP12.68□□□□□ -0.38
CHUK-203ENST00000588656 TRHP20396 242 aaPredicted RBP12.66□□□□□ -0.38
CHUK-203ENST00000588656 SLC4A1APQ9BWU0 796 aaKnown RBP12.62□□□□□ -0.39
CHUK-203ENST00000588656 MYCNP04198 464 aaPredicted RBP12.59□□□□□ -0.39
CHUK-203ENST00000588656 ABCB7O75027 752 aa12.53□□□□□ -0.4
CHUK-203ENST00000588656 FOXD4L1Q9NU39 408 aa12.46□□□□□ -0.41
CHUK-203ENST00000588656 POLA2Q14181 598 aa12.34□□□□□ -0.43
CHUK-203ENST00000588656 RBM42Q9BTD8 480 aaKnown RBP12.25□□□□□ -0.45
CHUK-203ENST00000588656 ATF5Q9Y2D1 282 aaPredicted RBP12.23□□□□□ -0.45
CHUK-203ENST00000588656 ZBTB22O15209 634 aa12.2□□□□□ -0.46
CHUK-203ENST00000588656 RB1CC1Q8TDY2 1594 aa12.2□□□□□ -0.46
CHUK-203ENST00000588656 POTEHQ6S545 545 aa12.19□□□□□ -0.46
CHUK-203ENST00000588656 ZBTB12Q9Y330 459 aaPredicted RBP12.15□□□□□ -0.46
CHUK-203ENST00000588656 UNC13AQ9UPW8 1703 aa12.14□□□□□ -0.47
CHUK-203ENST00000588656 ATXN8OSP0DMR3 200 aa12.13□□□□□ -0.47
CHUK-203ENST00000588656 DCAF8L2P0C7V8 631 aa12.09□□□□□ -0.47
CHUK-203ENST00000588656 PABPN1Q86U42 306 aaKnown RBP eCLIP12.05□□□□□ -0.48
CHUK-203ENST00000588656 NACADO15069 1562 aa12.04□□□□□ -0.48
CHUK-203ENST00000588656 AKT1S1Q96B36 256 aa11.96□□□□□ -0.49
CHUK-203ENST00000588656 CHRDL2Q6WN34 429 aa11.92□□□□□ -0.5
CHUK-203ENST00000588656 BICRAQ9NZM4 1560 aa11.91□□□□□ -0.5
CHUK-203ENST00000588656 OSCARQ8IYS5 282 aa11.89□□□□□ -0.51
CHUK-203ENST00000588656 FBLN2P98095 1184 aa11.85□□□□□ -0.51
CHUK-203ENST00000588656 REM2Q8IYK8 340 aaPredicted RBP11.82□□□□□ -0.52
CHUK-203ENST00000588656 SCRIBQ14160 1630 aa11.76□□□□□ -0.53
CHUK-203ENST00000588656 SPDYE2BA6NHP3 402 aa11.75□□□□□ -0.53
CHUK-203ENST00000588656 SPDYE6P0CI01 402 aa11.75□□□□□ -0.53
CHUK-203ENST00000588656 SPDYE2Q495Y8 402 aa11.75□□□□□ -0.53
CHUK-203ENST00000588656 MYO15BQ96JP2 1530 aa11.72□□□□□ -0.53
CHUK-203ENST00000588656 CSRNP3Q8WYN3 585 aa11.72□□□□□ -0.53
CHUK-203ENST00000588656 CC2D2AQ9P2K1 1620 aa11.71□□□□□ -0.54
CHUK-203ENST00000588656 ZCCHC6Q5VYS8 1495 aaKnown RBP11.7□□□□□ -0.54
CHUK-203ENST00000588656 MKRN4PQ13434 485 aaPredicted RBP11.67□□□□□ -0.54
CHUK-203ENST00000588656 PITPNM1O00562 1244 aa11.66□□□□□ -0.54
CHUK-203ENST00000588656 CECR2Q9BXF3 1484 aa11.63□□□□□ -0.55
CHUK-203ENST00000588656 PIP4P2Q8N4L2 257 aa11.63□□□□□ -0.55
CHUK-203ENST00000588656 ZNF692Q9BU19 519 aaPredicted RBP11.61□□□□□ -0.55
CHUK-203ENST00000588656 EIF4G1Q04637 1599 aaKnown RBP11.61□□□□□ -0.55
CHUK-203ENST00000588656 FXR2P51116 673 aaKnown RBP eCLIP11.59□□□□□ -0.55
CHUK-203ENST00000588656 DCAF1Q9Y4B6 1507 aa11.56□□□□□ -0.56
CHUK-203ENST00000588656 EHMT2Q96KQ7 1210 aa11.56□□□□□ -0.56
CHUK-203ENST00000588656 SPDYE1Q8NFV5 336 aaPredicted RBP11.55□□□□□ -0.56
CHUK-203ENST00000588656 SSUH2Q9Y2M2 353 aa11.55□□□□□ -0.56
CHUK-203ENST00000588656 SHROOM4Q9ULL8 1493 aa11.52□□□□□ -0.56
CHUK-203ENST00000588656 CLEC11AQ9Y240 323 aa11.49□□□□□ -0.57
CHUK-203ENST00000588656 HAX1O00165 279 aa11.45□□□□□ -0.58
CHUK-203ENST00000588656 SP7Q8TDD2 431 aaPredicted RBP11.45□□□□□ -0.58
CHUK-203ENST00000588656 PRKAR2AP13861 404 aaKnown RBP11.38□□□□□ -0.59
CHUK-203ENST00000588656 PRR29P0C7W0 189 aa11.34□□□□□ -0.59
CHUK-203ENST00000588656 EVX2Q03828 476 aa11.24□□□□□ -0.61
CHUK-203ENST00000588656 CHADLQ6NUI6 762 aa11.22□□□□□ -0.61
CHUK-203ENST00000588656 DNAJC5Q9H3Z4 198 aa11.22□□□□□ -0.61
CHUK-203ENST00000588656 C19orf67A6NJJ6 358 aa11.21□□□□□ -0.61
CHUK-203ENST00000588656 SPDYE4A6NLX3 237 aa11.19□□□□□ -0.62
CHUK-203ENST00000588656 STAG3Q9UJ98 1225 aa11.18□□□□□ -0.62
CHUK-203ENST00000588656 ERCC6Q03468 1493 aa11.17□□□□□ -0.62
CHUK-203ENST00000588656 NESP48681 1621 aa11.13□□□□□ -0.63
CHUK-203ENST00000588656 SMARCA4P51532 1647 aa11.13□□□□□ -0.63
CHUK-203ENST00000588656 FARP1Q9Y4F1 1045 aaPredicted RBP11.11□□□□□ -0.63
CHUK-203ENST00000588656 CUX2O14529 1486 aa11.1□□□□□ -0.63
CHUK-203ENST00000588656 ATAD2BQ9ULI0 1458 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms