RNA–Protein interactions for RNA: ENST00000578093.1

PTPRM-206, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 464 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-206ENST00000578093 AEBP2Q6ZN18 517 aaPredicted RBP16.36■□□□□ 0.21
PTPRM-206ENST00000578093 CHIC1Q5VXU3 224 aa15.1■□□□□ 0.01
PTPRM-206ENST00000578093 POTEDQ86YR6 584 aa14.91□□□□□ -0.02
PTPRM-206ENST00000578093 SENP3Q9H4L4 574 aaPredicted RBP14.04□□□□□ -0.16
PTPRM-206ENST00000578093 PHF23Q9BUL5 403 aaPredicted RBP13.7□□□□□ -0.22
PTPRM-206ENST00000578093 FOXD1Q16676 465 aa13.31□□□□□ -0.28
PTPRM-206ENST00000578093 MSH5O43196 834 aa12.89□□□□□ -0.35
PTPRM-206ENST00000578093 PIAS4Q8N2W9 510 aaPredicted RBP12.03□□□□□ -0.48
PTPRM-206ENST00000578093 CACNB1Q02641 598 aaPredicted RBP11.84□□□□□ -0.51
PTPRM-206ENST00000578093 PPP6R1Q9UPN7 881 aa11.48□□□□□ -0.57
PTPRM-206ENST00000578093 POTEHQ6S545 545 aa11.39□□□□□ -0.59
PTPRM-206ENST00000578093 ADRA2BP18089 450 aa11.3□□□□□ -0.6
PTPRM-206ENST00000578093 DMRT2Q9Y5R5 561 aa10.98□□□□□ -0.65
PTPRM-206ENST00000578093 RNF39Q9H2S5 420 aa10.95□□□□□ -0.66
PTPRM-206ENST00000578093 MAPK8IP2Q13387 824 aaPredicted RBP10.8□□□□□ -0.68
PTPRM-206ENST00000578093 C1QBPQ07021 282 aaKnown RBP10.66□□□□□ -0.7
PTPRM-206ENST00000578093 PLPPR3Q6T4P5 718 aa10.66□□□□□ -0.7
PTPRM-206ENST00000578093 DCAF8L1A6NGE4 600 aa10.43□□□□□ -0.74
PTPRM-206ENST00000578093 NISCHQ9Y2I1 1504 aa10.25□□□□□ -0.77
PTPRM-206ENST00000578093 SCAF1Q9H7N4 1312 aaKnown RBP10.21□□□□□ -0.78
PTPRM-206ENST00000578093 HOXD11P31277 338 aaPredicted RBP10.07□□□□□ -0.8
PTPRM-206ENST00000578093 SP7Q8TDD2 431 aaPredicted RBP10.05□□□□□ -0.8
PTPRM-206ENST00000578093 DNAJC5BQ9UF47 199 aa9.99□□□□□ -0.81
PTPRM-206ENST00000578093 PLSCR2Q9NRY7 297 aa9.83□□□□□ -0.84
PTPRM-206ENST00000578093 DSG3P32926 999 aa9.8□□□□□ -0.84
PTPRM-206ENST00000578093 CHRDL2Q6WN34 429 aa9.66□□□□□ -0.86
PTPRM-206ENST00000578093 RNF216Q9NWF9 866 aaPredicted RBP9.6□□□□□ -0.87
PTPRM-206ENST00000578093 SPINK5Q9NQ38 1064 aaPredicted RBP9.48□□□□□ -0.89
PTPRM-206ENST00000578093 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.46□□□□□ -0.9
PTPRM-206ENST00000578093 CAPN15O75808 1086 aa9.42□□□□□ -0.9
PTPRM-206ENST00000578093 LHX8Q68G74 356 aa9.39□□□□□ -0.91
PTPRM-206ENST00000578093 ABCC9O60706 1549 aa9.39□□□□□ -0.91
PTPRM-206ENST00000578093 PPP4R3CPQ6ZMV5 832 aa9.35□□□□□ -0.91
PTPRM-206ENST00000578093 CNKSR2Q8WXI2 1034 aa9.31□□□□□ -0.92
PTPRM-206ENST00000578093 CCDC180Q9P1Z9 1646 aa9.31□□□□□ -0.92
PTPRM-206ENST00000578093 RBM42Q9BTD8 480 aaKnown RBP9.28□□□□□ -0.92
PTPRM-206ENST00000578093 HAX1O00165 279 aa9.27□□□□□ -0.93
PTPRM-206ENST00000578093 KCNA4P22459 653 aa9.23□□□□□ -0.93
PTPRM-206ENST00000578093 U3KPZ7 1027 aaPredicted RBP9.23□□□□□ -0.93
PTPRM-206ENST00000578093 EVX2Q03828 476 aa9.21□□□□□ -0.94
PTPRM-206ENST00000578093 NCBP3Q53F19 620 aaKnown RBP9.21□□□□□ -0.94
PTPRM-206ENST00000578093 PIP4P2Q8N4L2 257 aa9.18□□□□□ -0.94
PTPRM-206ENST00000578093 ABCB7O75027 752 aa9.13□□□□□ -0.95
PTPRM-206ENST00000578093 NPM3O75607 178 aaKnown RBP8.99□□□□□ -0.97
PTPRM-206ENST00000578093 TRHP20396 242 aaPredicted RBP8.96□□□□□ -0.98
PTPRM-206ENST00000578093 FXR2P51116 673 aaKnown RBP eCLIP8.93□□□□□ -0.98
PTPRM-206ENST00000578093 POTEMA6NI47 508 aa8.91□□□□□ -0.98
PTPRM-206ENST00000578093 ZNF219Q9P2Y4 722 aaPredicted RBP8.9□□□□□ -0.98
PTPRM-206ENST00000578093 RB1CC1Q8TDY2 1594 aa8.86□□□□□ -0.99
PTPRM-206ENST00000578093 GABBR2O75899 941 aa8.86□□□□□ -0.99
PTPRM-206ENST00000578093 SLC4A1APQ9BWU0 796 aaKnown RBP8.86□□□□□ -0.99
PTPRM-206ENST00000578093 AKT1S1Q96B36 256 aa8.84□□□□□ -0.99
PTPRM-206ENST00000578093 POTEGQ6S5H5 508 aa8.83□□□□□ -1
PTPRM-206ENST00000578093 PCDH10Q9P2E7 1040 aa8.82□□□□□ -1
PTPRM-206ENST00000578093 UNC13AQ9UPW8 1703 aa8.8□□□□□ -1
PTPRM-206ENST00000578093 REM2Q8IYK8 340 aaPredicted RBP8.78□□□□□ -1
PTPRM-206ENST00000578093 NACADO15069 1562 aa8.76□□□□□ -1.01
PTPRM-206ENST00000578093 POTEIP0CG38 1075 aa8.74□□□□□ -1.01
PTPRM-206ENST00000578093 EHMT2Q96KQ7 1210 aa8.72□□□□□ -1.01
PTPRM-206ENST00000578093 PITPNM1O00562 1244 aa8.71□□□□□ -1.02
PTPRM-206ENST00000578093 C19orf67A6NJJ6 358 aa8.69□□□□□ -1.02
PTPRM-206ENST00000578093 BICRAQ9NZM4 1560 aa8.69□□□□□ -1.02
PTPRM-206ENST00000578093 PABPN1Q86U42 306 aaKnown RBP eCLIP8.67□□□□□ -1.02
PTPRM-206ENST00000578093 APLP2Q06481 763 aa8.66□□□□□ -1.02
PTPRM-206ENST00000578093 OTUD5Q96G74 571 aa8.63□□□□□ -1.03
PTPRM-206ENST00000578093 DCAF8L2P0C7V8 631 aa8.59□□□□□ -1.03
PTPRM-206ENST00000578093 MYO15BQ96JP2 1530 aa8.59□□□□□ -1.03
PTPRM-206ENST00000578093 CSRNP3Q8WYN3 585 aa8.54□□□□□ -1.04
PTPRM-206ENST00000578093 FOXD4L1Q9NU39 408 aa8.51□□□□□ -1.05
PTPRM-206ENST00000578093 CC2D2AQ9P2K1 1620 aa8.5□□□□□ -1.05
PTPRM-206ENST00000578093 ZCCHC6Q5VYS8 1495 aaKnown RBP8.5□□□□□ -1.05
PTPRM-206ENST00000578093 SCRIBQ14160 1630 aa8.48□□□□□ -1.05
PTPRM-206ENST00000578093 SHROOM4Q9ULL8 1493 aa8.46□□□□□ -1.05
PTPRM-206ENST00000578093 POLA2Q14181 598 aa8.46□□□□□ -1.06
PTPRM-206ENST00000578093 ZBTB22O15209 634 aa8.45□□□□□ -1.06
PTPRM-206ENST00000578093 CECR2Q9BXF3 1484 aa8.45□□□□□ -1.06
PTPRM-206ENST00000578093 DCAF1Q9Y4B6 1507 aa8.44□□□□□ -1.06
PTPRM-206ENST00000578093 EIF4G1Q04637 1599 aaKnown RBP8.44□□□□□ -1.06
PTPRM-206ENST00000578093 LCE2DQ5TA82 110 aaPredicted RBP8.44□□□□□ -1.06
PTPRM-206ENST00000578093 POTEB2H3BUK9 544 aa8.42□□□□□ -1.06
PTPRM-206ENST00000578093 SLC4A2P04920 1241 aa8.42□□□□□ -1.06
PTPRM-206ENST00000578093 PRKAR2AP13861 404 aaKnown RBP8.42□□□□□ -1.06
PTPRM-206ENST00000578093 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.37□□□□□ -1.07
PTPRM-206ENST00000578093 HNRNPUL2Q1KMD3 747 aaKnown RBP8.37□□□□□ -1.07
PTPRM-206ENST00000578093 MYCNP04198 464 aaPredicted RBP8.35□□□□□ -1.07
PTPRM-206ENST00000578093 SAMD1Q6SPF0 538 aaPredicted RBP8.3□□□□□ -1.08
PTPRM-206ENST00000578093 OSCARQ8IYS5 282 aa8.26□□□□□ -1.09
PTPRM-206ENST00000578093 DCBLD2Q96PD2 775 aa8.24□□□□□ -1.09
PTPRM-206ENST00000578093 ATXN8OSP0DMR3 200 aa8.23□□□□□ -1.09
PTPRM-206ENST00000578093 CLCN6P51797 869 aa8.2□□□□□ -1.1
PTPRM-206ENST00000578093 DNAJC5Q9H3Z4 198 aa8.19□□□□□ -1.1
PTPRM-206ENST00000578093 CDAN1Q8IWY9 1227 aa8.18□□□□□ -1.1
PTPRM-206ENST00000578093 MMRN1Q13201 1228 aa8.17□□□□□ -1.1
PTPRM-206ENST00000578093 FAM163AQ96GL9 167 aaPredicted RBP8.15□□□□□ -1.1
PTPRM-206ENST00000578093 ZBTB12Q9Y330 459 aaPredicted RBP8.13□□□□□ -1.11
PTPRM-206ENST00000578093 CUX2O14529 1486 aa8.11□□□□□ -1.11
PTPRM-206ENST00000578093 POTEJP0CG39 1038 aa8.1□□□□□ -1.11
PTPRM-206ENST00000578093 NCAPD3P42695 1498 aa8.07□□□□□ -1.12
PTPRM-206ENST00000578093 ERCC6Q03468 1493 aa8.07□□□□□ -1.12
PTPRM-206ENST00000578093 SMARCA4P51532 1647 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms