RNA–Protein interactions for RNA: ENST00000576012.5

SCARF1-209, Transcript of scavenger receptor class F member 1, humanhuman

TSL 2

Gene SCARF1, Length 3,292 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-209ENST00000576012 NISCHQ9Y2I1 1504 aa27.68■■■□□ 2.02
SCARF1-209ENST00000576012 SHROOM4Q9ULL8 1493 aa24.92■■□□□ 1.58
SCARF1-209ENST00000576012 SUPT5HO00267 1087 aaKnown RBP24.82■■□□□ 1.56
SCARF1-209ENST00000576012 HRCP23327 699 aa24.43■■□□□ 1.5
SCARF1-209ENST00000576012 PPARGC1BQ86YN6 1023 aaKnown RBP24.41■■□□□ 1.5
SCARF1-209ENST00000576012 PCGF6Q9BYE7 350 aa24.41■■□□□ 1.5
SCARF1-209ENST00000576012 DCAF8L2P0C7V8 631 aa24.09■■□□□ 1.45
SCARF1-209ENST00000576012 MYO15BQ96JP2 1530 aa23.97■■□□□ 1.43
SCARF1-209ENST00000576012 CHIC1Q5VXU3 224 aa23.94■■□□□ 1.42
SCARF1-209ENST00000576012 CCDC180Q9P1Z9 1646 aa23.92■■□□□ 1.42
SCARF1-209ENST00000576012 LOC105371045A0A1W2PR82 267 aa23.74■■□□□ 1.39
SCARF1-209ENST00000576012 EHMT2Q96KQ7 1210 aa23.35■■□□□ 1.33
SCARF1-209ENST00000576012 TRIM26Q12899 539 aaPredicted RBP23.26■■□□□ 1.31
SCARF1-209ENST00000576012 ZCCHC6Q5VYS8 1495 aaKnown RBP23.25■■□□□ 1.31
SCARF1-209ENST00000576012 SCAF1Q9H7N4 1312 aaKnown RBP23.21■■□□□ 1.31
SCARF1-209ENST00000576012 FAM9AQ8IZU1 332 aaPredicted RBP23.11■■□□□ 1.29
SCARF1-209ENST00000576012 PELP1Q8IZL8 1130 aaKnown RBP23.09■■□□□ 1.29
SCARF1-209ENST00000576012 DCAF1Q9Y4B6 1507 aa23.04■■□□□ 1.28
SCARF1-209ENST00000576012 ABCC9O60706 1549 aa22.87■■□□□ 1.25
SCARF1-209ENST00000576012 ZEB1P37275 1124 aaPredicted RBP22.84■■□□□ 1.25
SCARF1-209ENST00000576012 TRIM41Q8WV44 630 aa22.71■■□□□ 1.23
SCARF1-209ENST00000576012 TTBK1Q5TCY1 1321 aaPredicted RBP22.69■■□□□ 1.22
SCARF1-209ENST00000576012 NEUROD1Q13562 356 aa22.69■■□□□ 1.22
SCARF1-209ENST00000576012 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.68■■□□□ 1.22
SCARF1-209ENST00000576012 GTF3C3Q9Y5Q9 886 aa22.6■■□□□ 1.21
SCARF1-209ENST00000576012 ACIN1Q9UKV3 1341 aaKnown RBP22.57■■□□□ 1.2
SCARF1-209ENST00000576012 CCER1Q8TC90 406 aaPredicted RBP22.56■■□□□ 1.2
SCARF1-209ENST00000576012 YTHDC1Q96MU7 727 aaKnown RBP22.44■■□□□ 1.18
SCARF1-209ENST00000576012 MYT1Q01538 1121 aa22.42■■□□□ 1.18
SCARF1-209ENST00000576012 DIEXFQ68CQ4 756 aaKnown RBP22.39■■□□□ 1.17
SCARF1-209ENST00000576012 CENPBP07199 599 aaPredicted RBP22.32■■□□□ 1.16
SCARF1-209ENST00000576012 NACADO15069 1562 aa22.31■■□□□ 1.16
SCARF1-209ENST00000576012 SCRIBQ14160 1630 aa22.31■■□□□ 1.16
SCARF1-209ENST00000576012 RB1CC1Q8TDY2 1594 aa22.15■■□□□ 1.14
SCARF1-209ENST00000576012 RSF1Q96T23 1441 aaPredicted RBP22.01■■□□□ 1.11
SCARF1-209ENST00000576012 MIER1Q8N108 512 aa21.88■■□□□ 1.09
SCARF1-209ENST00000576012 ZNF316A6NFI3 1004 aaPredicted RBP21.86■■□□□ 1.09
SCARF1-209ENST00000576012 HNRNPUL2Q1KMD3 747 aaKnown RBP21.81■■□□□ 1.08
SCARF1-209ENST00000576012 CECR2Q9BXF3 1484 aa21.71■■□□□ 1.07
SCARF1-209ENST00000576012 UBTFP17480 764 aaKnown RBP21.7■■□□□ 1.07
SCARF1-209ENST00000576012 PABPN1Q86U42 306 aaKnown RBP eCLIP21.7■■□□□ 1.07
SCARF1-209ENST00000576012 UNC13AQ9UPW8 1703 aa21.69■■□□□ 1.06
SCARF1-209ENST00000576012 RANGAP1P46060 587 aaPredicted RBP21.68■■□□□ 1.06
SCARF1-209ENST00000576012 MROH2BQ7Z745 1585 aa21.47■■□□□ 1.03
SCARF1-209ENST00000576012 BICRAQ9NZM4 1560 aa21.47■■□□□ 1.03
SCARF1-209ENST00000576012 CEP162Q5TB80 1403 aa21.45■■□□□ 1.02
SCARF1-209ENST00000576012 PRKCSHP14314 528 aaPredicted RBP21.42■■□□□ 1.02
SCARF1-209ENST00000576012 BCANQ96GW7 911 aa21.42■■□□□ 1.02
SCARF1-209ENST00000576012 SUPT16HQ9Y5B9 1047 aaKnown RBP21.37■■□□□ 1.01
SCARF1-209ENST00000576012 WIZO95785 1651 aa21.36■■□□□ 1.01
SCARF1-209ENST00000576012 SOGA1O94964 1423 aa21.36■■□□□ 1.01
SCARF1-209ENST00000576012 BAZ1AQ9NRL2 1556 aaPredicted RBP21.36■■□□□ 1.01
SCARF1-209ENST00000576012 CCDC88BA6NC98 1476 aa21.34■■□□□ 1.01
SCARF1-209ENST00000576012 ABCC8Q09428 1581 aa21.33■■□□□ 1.01
SCARF1-209ENST00000576012 CSRNP3Q8WYN3 585 aa21.3■■□□□ 1
SCARF1-209ENST00000576012 APLP2Q06481 763 aa21.27■■□□□ 1
SCARF1-209ENST00000576012 SMARCA4P51532 1647 aa21.25■□□□□ 0.99
SCARF1-209ENST00000576012 TSHZ2Q9NRE2 1034 aa21.24■□□□□ 0.99
SCARF1-209ENST00000576012 RUSC2Q8N2Y8 1516 aa21.24■□□□□ 0.99
SCARF1-209ENST00000576012 KCNH8Q96L42 1107 aa21.2■□□□□ 0.98
SCARF1-209ENST00000576012 WRNQ14191 1432 aaPredicted RBP eCLIP21.19■□□□□ 0.98
SCARF1-209ENST00000576012 TNIKQ9UKE5 1360 aa21.16■□□□□ 0.98
SCARF1-209ENST00000576012 ANP32EQ9BTT0 268 aa21.16■□□□□ 0.98
SCARF1-209ENST00000576012 ITGAEP38570 1179 aa21.15■□□□□ 0.98
SCARF1-209ENST00000576012 BCL11AQ9H165 835 aa21.14■□□□□ 0.97
SCARF1-209ENST00000576012 FKBP8Q14318 412 aa21.04■□□□□ 0.96
SCARF1-209ENST00000576012 TOP2AP11388 1531 aaKnown RBP21■□□□□ 0.95
SCARF1-209ENST00000576012 CLIP1P30622 1438 aa20.93■□□□□ 0.94
SCARF1-209ENST00000576012 HIRIP3Q9BW71 556 aaPredicted RBP20.93■□□□□ 0.94
SCARF1-209ENST00000576012 GOLGA3Q08378 1498 aa20.91■□□□□ 0.94
SCARF1-209ENST00000576012 ATAD2BQ9ULI0 1458 aa20.9■□□□□ 0.94
SCARF1-209ENST00000576012 DDX10Q13206 875 aaKnown RBP20.89■□□□□ 0.93
SCARF1-209ENST00000576012 TRIM52Q96A61 297 aa20.89■□□□□ 0.93
SCARF1-209ENST00000576012 EIF4G1Q04637 1599 aaKnown RBP20.87■□□□□ 0.93
SCARF1-209ENST00000576012 BAZ1BQ9UIG0 1483 aaKnown RBP20.85■□□□□ 0.93
SCARF1-209ENST00000576012 PEG3Q9GZU2 1588 aa20.85■□□□□ 0.93
SCARF1-209ENST00000576012 SMARCA2P51531 1590 aa20.84■□□□□ 0.93
SCARF1-209ENST00000576012 ERICH6Q7L0X2 663 aa20.84■□□□□ 0.93
SCARF1-209ENST00000576012 KANK4Q5T7N3 995 aaPredicted RBP20.83■□□□□ 0.93
SCARF1-209ENST00000576012 DHX57Q6P158 1386 aaKnown RBP20.83■□□□□ 0.93
SCARF1-209ENST00000576012 SLC24A1O60721 1099 aa20.81■□□□□ 0.92
SCARF1-209ENST00000576012 CLSPNQ9HAW4 1339 aa20.8■□□□□ 0.92
SCARF1-209ENST00000576012 RBM19Q9Y4C8 960 aaKnown RBP20.8■□□□□ 0.92
SCARF1-209ENST00000576012 NEFLP07196 543 aa20.79■□□□□ 0.92
SCARF1-209ENST00000576012 IRX6P78412 446 aaPredicted RBP20.75■□□□□ 0.91
SCARF1-209ENST00000576012 VPS8Q8N3P4 1428 aa20.74■□□□□ 0.91
SCARF1-209ENST00000576012 EEA1Q15075 1411 aa20.72■□□□□ 0.91
SCARF1-209ENST00000576012 SIN3AQ96ST3 1273 aa20.68■□□□□ 0.9
SCARF1-209ENST00000576012 RAPGEF2Q9Y4G8 1499 aa20.68■□□□□ 0.9
SCARF1-209ENST00000576012 CEP164Q9UPV0 1460 aa20.66■□□□□ 0.9
SCARF1-209ENST00000576012 NCAPD3P42695 1498 aa20.63■□□□□ 0.89
SCARF1-209ENST00000576012 MSH5O43196 834 aa20.6■□□□□ 0.89
SCARF1-209ENST00000576012 ATP1B4Q9UN42 357 aaPredicted RBP20.59■□□□□ 0.89
SCARF1-209ENST00000576012 HMGXB3Q12766 1538 aa20.57■□□□□ 0.88
SCARF1-209ENST00000576012 CC2D2AQ9P2K1 1620 aa20.55■□□□□ 0.88
SCARF1-209ENST00000576012 FAM50AQ14320 339 aaKnown RBP20.54■□□□□ 0.88
SCARF1-209ENST00000576012 KIF21BO75037 1637 aa20.51■□□□□ 0.87
SCARF1-209ENST00000576012 ANP32CO43423 234 aa20.49■□□□□ 0.87
SCARF1-209ENST00000576012 SYNJ1O43426 1573 aa20.45■□□□□ 0.86
SCARF1-209ENST00000576012 RAB3GAP2Q9H2M9 1393 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms