RNA–Protein interactions for RNA: ENST00000568219.5

PALB2-206, Transcript of partner and localizer of BRCA2, humanhuman

TSL 1 (best) BASIC

Gene PALB2, Length 3,963 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-206ENST00000568219 NISCHQ9Y2I1 1504 aa18.96■□□□□ 0.63
PALB2-206ENST00000568219 SUPT5HO00267 1087 aaKnown RBP18.43■□□□□ 0.54
PALB2-206ENST00000568219 SHROOM4Q9ULL8 1493 aa18.24■□□□□ 0.51
PALB2-206ENST00000568219 PCGF6Q9BYE7 350 aa18.12■□□□□ 0.49
PALB2-206ENST00000568219 DCAF8L2P0C7V8 631 aa18.01■□□□□ 0.47
PALB2-206ENST00000568219 HRCP23327 699 aa17.86■□□□□ 0.45
PALB2-206ENST00000568219 PPARGC1BQ86YN6 1023 aaKnown RBP17.86■□□□□ 0.45
PALB2-206ENST00000568219 EHMT2Q96KQ7 1210 aa17.61■□□□□ 0.41
PALB2-206ENST00000568219 PELP1Q8IZL8 1130 aaKnown RBP17.43■□□□□ 0.38
PALB2-206ENST00000568219 LOC105371045A0A1W2PR82 267 aa17.34■□□□□ 0.37
PALB2-206ENST00000568219 CHIC1Q5VXU3 224 aa17.32■□□□□ 0.36
PALB2-206ENST00000568219 FAM9AQ8IZU1 332 aaPredicted RBP17.27■□□□□ 0.35
PALB2-206ENST00000568219 TRIM26Q12899 539 aaPredicted RBP17.13■□□□□ 0.33
PALB2-206ENST00000568219 TTBK1Q5TCY1 1321 aaPredicted RBP17.09■□□□□ 0.33
PALB2-206ENST00000568219 ZEB1P37275 1124 aaPredicted RBP17.06■□□□□ 0.32
PALB2-206ENST00000568219 CCER1Q8TC90 406 aaPredicted RBP16.94■□□□□ 0.3
PALB2-206ENST00000568219 YTHDC1Q96MU7 727 aaKnown RBP16.94■□□□□ 0.3
PALB2-206ENST00000568219 CENPBP07199 599 aaPredicted RBP16.93■□□□□ 0.3
PALB2-206ENST00000568219 SCAF1Q9H7N4 1312 aaKnown RBP16.91■□□□□ 0.3
PALB2-206ENST00000568219 MYO15BQ96JP2 1530 aa16.83■□□□□ 0.29
PALB2-206ENST00000568219 TRIM41Q8WV44 630 aa16.82■□□□□ 0.28
PALB2-206ENST00000568219 GTF3C3Q9Y5Q9 886 aa16.79■□□□□ 0.28
PALB2-206ENST00000568219 MYT1Q01538 1121 aa16.78■□□□□ 0.28
PALB2-206ENST00000568219 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.76■□□□□ 0.27
PALB2-206ENST00000568219 ACIN1Q9UKV3 1341 aaKnown RBP16.64■□□□□ 0.25
PALB2-206ENST00000568219 NEUROD1Q13562 356 aa16.63■□□□□ 0.25
PALB2-206ENST00000568219 DIEXFQ68CQ4 756 aaKnown RBP16.63■□□□□ 0.25
PALB2-206ENST00000568219 DCAF1Q9Y4B6 1507 aa16.42■□□□□ 0.22
PALB2-206ENST00000568219 RANGAP1P46060 587 aaPredicted RBP16.38■□□□□ 0.21
PALB2-206ENST00000568219 HNRNPUL2Q1KMD3 747 aaKnown RBP16.27■□□□□ 0.19
PALB2-206ENST00000568219 UBTFP17480 764 aaKnown RBP16.26■□□□□ 0.19
PALB2-206ENST00000568219 APLP2Q06481 763 aa16.23■□□□□ 0.19
PALB2-206ENST00000568219 ZNF316A6NFI3 1004 aaPredicted RBP16.15■□□□□ 0.18
PALB2-206ENST00000568219 BCANQ96GW7 911 aa16.12■□□□□ 0.17
PALB2-206ENST00000568219 MIER1Q8N108 512 aa16.07■□□□□ 0.16
PALB2-206ENST00000568219 ERICH6Q7L0X2 663 aa16.03■□□□□ 0.16
PALB2-206ENST00000568219 CCDC180Q9P1Z9 1646 aa16■□□□□ 0.15
PALB2-206ENST00000568219 NEFLP07196 543 aa15.95■□□□□ 0.14
PALB2-206ENST00000568219 ZCCHC6Q5VYS8 1495 aaKnown RBP15.93■□□□□ 0.14
PALB2-206ENST00000568219 ITGAEP38570 1179 aa15.92■□□□□ 0.14
PALB2-206ENST00000568219 FKBP8Q14318 412 aa15.73■□□□□ 0.11
PALB2-206ENST00000568219 BCL11AQ9H165 835 aa15.72■□□□□ 0.11
PALB2-206ENST00000568219 ANP32EQ9BTT0 268 aa15.71■□□□□ 0.11
PALB2-206ENST00000568219 ATP1B4Q9UN42 357 aaPredicted RBP15.69■□□□□ 0.1
PALB2-206ENST00000568219 SUPT16HQ9Y5B9 1047 aaKnown RBP15.68■□□□□ 0.1
PALB2-206ENST00000568219 CNGB1Q14028 1251 aaPredicted RBP15.6■□□□□ 0.09
PALB2-206ENST00000568219 CSRNP3Q8WYN3 585 aa15.59■□□□□ 0.09
PALB2-206ENST00000568219 TRIM52Q96A61 297 aa15.57■□□□□ 0.08
PALB2-206ENST00000568219 TSHZ2Q9NRE2 1034 aa15.55■□□□□ 0.08
PALB2-206ENST00000568219 DDX10Q13206 875 aaKnown RBP15.53■□□□□ 0.08
PALB2-206ENST00000568219 RSF1Q96T23 1441 aaPredicted RBP15.52■□□□□ 0.07
PALB2-206ENST00000568219 HIRIP3Q9BW71 556 aaPredicted RBP15.5■□□□□ 0.07
PALB2-206ENST00000568219 IRX6P78412 446 aaPredicted RBP15.49■□□□□ 0.07
PALB2-206ENST00000568219 CDK11AQ9UQ88 783 aaPredicted RBP15.46■□□□□ 0.06
PALB2-206ENST00000568219 CLSPNQ9HAW4 1339 aa15.44■□□□□ 0.06
PALB2-206ENST00000568219 ANP32CO43423 234 aa15.41■□□□□ 0.06
PALB2-206ENST00000568219 CEP162Q5TB80 1403 aa15.41■□□□□ 0.06
PALB2-206ENST00000568219 KCNH8Q96L42 1107 aa15.4■□□□□ 0.06
PALB2-206ENST00000568219 NBR1Q14596 966 aa15.38■□□□□ 0.05
PALB2-206ENST00000568219 RBM19Q9Y4C8 960 aaKnown RBP15.37■□□□□ 0.05
PALB2-206ENST00000568219 FAM50AQ14320 339 aaKnown RBP15.37■□□□□ 0.05
PALB2-206ENST00000568219 SCRIBQ14160 1630 aa15.35■□□□□ 0.05
PALB2-206ENST00000568219 POLR3GLQ9BT43 218 aa15.34■□□□□ 0.05
PALB2-206ENST00000568219 RTL5Q5HYW3 569 aaPredicted RBP15.33■□□□□ 0.04
PALB2-206ENST00000568219 HNRNPUQ00839 825 aaKnown RBP eCLIP15.3■□□□□ 0.04
PALB2-206ENST00000568219 RB1CC1Q8TDY2 1594 aa15.27■□□□□ 0.04
PALB2-206ENST00000568219 SOGA1O94964 1423 aa15.21■□□□□ 0.03
PALB2-206ENST00000568219 SENP3-EIF4A1A0A087X0R7 540 aa15.18■□□□□ 0.02
PALB2-206ENST00000568219 NPM2Q86SE8 214 aaKnown RBP15.17■□□□□ 0.02
PALB2-206ENST00000568219 TNIKQ9UKE5 1360 aa15.17■□□□□ 0.02
PALB2-206ENST00000568219 PABPN1Q86U42 306 aaKnown RBP eCLIP15.16■□□□□ 0.02
PALB2-206ENST00000568219 CLIP1P30622 1438 aa15.16■□□□□ 0.02
PALB2-206ENST00000568219 SIN3AQ96ST3 1273 aa15.16■□□□□ 0.02
PALB2-206ENST00000568219 FAM9BQ8IZU0 186 aa15.16■□□□□ 0.02
PALB2-206ENST00000568219 RTN4Q9NQC3 1192 aaKnown RBP15.15■□□□□ 0.02
PALB2-206ENST00000568219 CECR2Q9BXF3 1484 aa15.15■□□□□ 0.02
PALB2-206ENST00000568219 P3H3Q8IVL6 736 aa15.14■□□□□ 0.01
PALB2-206ENST00000568219 ABCC9O60706 1549 aa15.14■□□□□ 0.01
PALB2-206ENST00000568219 EIF5BO60841 1220 aaKnown RBP15.12■□□□□ 0.01
PALB2-206ENST00000568219 DEKP35659 375 aaKnown RBP15.11■□□□□ 0.01
PALB2-206ENST00000568219 CCDC88BA6NC98 1476 aa15.09■□□□□ 0.01
PALB2-206ENST00000568219 ANP32AP39687 249 aaKnown RBP15.07■□□□□ 0
PALB2-206ENST00000568219 B4GALNT3Q6L9W6 998 aa15.07■□□□□ 0
PALB2-206ENST00000568219 DAXXQ9UER7 740 aaPredicted RBP15.07■□□□□ 0
PALB2-206ENST00000568219 ABCC8Q09428 1581 aa15.03■□□□□ -0
PALB2-206ENST00000568219 KANK4Q5T7N3 995 aaPredicted RBP15.03■□□□□ -0
PALB2-206ENST00000568219 GOLGA3Q08378 1498 aa15.01□□□□□ -0.01
PALB2-206ENST00000568219 ZBTB47Q9UFB7 747 aaPredicted RBP15□□□□□ -0.01
PALB2-206ENST00000568219 RUSC2Q8N2Y8 1516 aa14.98□□□□□ -0.01
PALB2-206ENST00000568219 CCDC136Q96JN2 1154 aa14.98□□□□□ -0.01
PALB2-206ENST00000568219 WRNQ14191 1432 aaPredicted RBP eCLIP14.97□□□□□ -0.01
PALB2-206ENST00000568219 TONSLQ96HA7 1378 aa14.97□□□□□ -0.01
PALB2-206ENST00000568219 ZNF326Q5BKZ1 582 aaKnown RBP14.97□□□□□ -0.01
PALB2-206ENST00000568219 SALL2Q9Y467 1007 aaPredicted RBP14.97□□□□□ -0.01
PALB2-206ENST00000568219 MYT1LQ9UL68 1186 aa14.96□□□□□ -0.02
PALB2-206ENST00000568219 MRS2Q9HD23 443 aa14.95□□□□□ -0.02
PALB2-206ENST00000568219 MROH2BQ7Z745 1585 aa14.95□□□□□ -0.02
PALB2-206ENST00000568219 DHX57Q6P158 1386 aaKnown RBP14.94□□□□□ -0.02
PALB2-206ENST00000568219 NOP58Q9Y2X3 529 aaKnown RBP14.93□□□□□ -0.02
PALB2-206ENST00000568219 MSH5O43196 834 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms