RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	NISCH	Q9Y2I1	1504 aa		8.71	□□□□□ -1.01
SYNE2-223	ENST00000557005	SHROOM4	Q9ULL8	1493 aa		8.36	□□□□□ -1.07
SYNE2-223	ENST00000557005	SUPT5H	O00267	1087 aa	Known RBP	8.34	□□□□□ -1.07
SYNE2-223	ENST00000557005	DCAF8L2	P0C7V8	631 aa		8.32	□□□□□ -1.08
SYNE2-223	ENST00000557005	EHMT2	Q96KQ7	1210 aa		8.09	□□□□□ -1.11
SYNE2-223	ENST00000557005	PCGF6	Q9BYE7	350 aa		8.09	□□□□□ -1.12
SYNE2-223	ENST00000557005	HRC	P23327	699 aa		7.9	□□□□□ -1.15
SYNE2-223	ENST00000557005	PPARGC1B	Q86YN6	1023 aa	Known RBP	7.89	□□□□□ -1.15
SYNE2-223	ENST00000557005	TTBK1	Q5TCY1	1321 aa	Predicted RBP	7.85	□□□□□ -1.15
SYNE2-223	ENST00000557005	FAM9A	Q8IZU1	332 aa	Predicted RBP	7.84	□□□□□ -1.15
SYNE2-223	ENST00000557005	PELP1	Q8IZL8	1130 aa	Known RBP	7.79	□□□□□ -1.16
SYNE2-223	ENST00000557005	ZEB1	P37275	1124 aa	Predicted RBP	7.76	□□□□□ -1.17
SYNE2-223	ENST00000557005	YTHDC1	Q96MU7	727 aa	Known RBP	7.73	□□□□□ -1.17
SYNE2-223	ENST00000557005	LOC105371045	A0A1W2PR82	267 aa		7.71	□□□□□ -1.18
SYNE2-223	ENST00000557005	CCER1	Q8TC90	406 aa	Predicted RBP	7.7	□□□□□ -1.18
SYNE2-223	ENST00000557005	TRIM26	Q12899	539 aa	Predicted RBP	7.7	□□□□□ -1.18
SYNE2-223	ENST00000557005	CENPB	P07199	599 aa	Predicted RBP	7.7	□□□□□ -1.18
SYNE2-223	ENST00000557005	CHIC1	Q5VXU3	224 aa		7.67	□□□□□ -1.18
SYNE2-223	ENST00000557005	TRIM41	Q8WV44	630 aa		7.66	□□□□□ -1.18
SYNE2-223	ENST00000557005	MYT1	Q01538	1121 aa		7.59	□□□□□ -1.19
SYNE2-223	ENST00000557005	RANGAP1	P46060	587 aa	Predicted RBP	7.58	□□□□□ -1.2
SYNE2-223	ENST00000557005	MYO15B	Q96JP2	1530 aa		7.56	□□□□□ -1.2
SYNE2-223	ENST00000557005	APLP2	Q06481	763 aa		7.55	□□□□□ -1.2
SYNE2-223	ENST00000557005	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	7.51	□□□□□ -1.21
SYNE2-223	ENST00000557005	ERICH6	Q7L0X2	663 aa		7.49	□□□□□ -1.21
SYNE2-223	ENST00000557005	GTF3C3	Q9Y5Q9	886 aa		7.48	□□□□□ -1.21
SYNE2-223	ENST00000557005	DIEXF	Q68CQ4	756 aa	Known RBP	7.46	□□□□□ -1.21
SYNE2-223	ENST00000557005	UBTF	P17480	764 aa	Known RBP	7.45	□□□□□ -1.22
SYNE2-223	ENST00000557005	SCAF1	Q9H7N4	1312 aa	Known RBP	7.43	□□□□□ -1.22
SYNE2-223	ENST00000557005	DCAF1	Q9Y4B6	1507 aa		7.42	□□□□□ -1.22
SYNE2-223	ENST00000557005	ACIN1	Q9UKV3	1341 aa	Known RBP	7.4	□□□□□ -1.23
SYNE2-223	ENST00000557005	HNRNPUL2	Q1KMD3	747 aa	Known RBP	7.38	□□□□□ -1.23
SYNE2-223	ENST00000557005	CCDC180	Q9P1Z9	1646 aa		7.38	□□□□□ -1.23
SYNE2-223	ENST00000557005	NEFL	P07196	543 aa		7.35	□□□□□ -1.23
SYNE2-223	ENST00000557005	ZCCHC6	Q5VYS8	1495 aa	Known RBP	7.33	□□□□□ -1.24
SYNE2-223	ENST00000557005	ATP1B4	Q9UN42	357 aa	Predicted RBP	7.33	□□□□□ -1.24
SYNE2-223	ENST00000557005	BCAN	Q96GW7	911 aa		7.31	□□□□□ -1.24
SYNE2-223	ENST00000557005	NEUROD1	Q13562	356 aa		7.31	□□□□□ -1.24
SYNE2-223	ENST00000557005	ITGAE	P38570	1179 aa		7.3	□□□□□ -1.24
SYNE2-223	ENST00000557005	SCRIB	Q14160	1630 aa		7.28	□□□□□ -1.24
SYNE2-223	ENST00000557005	ZNF316	A6NFI3	1004 aa	Predicted RBP	7.27	□□□□□ -1.25
SYNE2-223	ENST00000557005	CNGB1	Q14028	1251 aa	Predicted RBP	7.16	□□□□□ -1.26
SYNE2-223	ENST00000557005	MIER1	Q8N108	512 aa		7.13	□□□□□ -1.27
SYNE2-223	ENST00000557005	POLR3GL	Q9BT43	218 aa		7.13	□□□□□ -1.27
SYNE2-223	ENST00000557005	FAM50A	Q14320	339 aa	Known RBP	7.11	□□□□□ -1.27
SYNE2-223	ENST00000557005	ABCC9	O60706	1549 aa		7.1	□□□□□ -1.27
SYNE2-223	ENST00000557005	FKBP8	Q14318	412 aa		7.09	□□□□□ -1.27
SYNE2-223	ENST00000557005	CDK11A	Q9UQ88	783 aa	Predicted RBP	7.07	□□□□□ -1.28
SYNE2-223	ENST00000557005	ANP32C	O43423	234 aa		7.06	□□□□□ -1.28
SYNE2-223	ENST00000557005	RTL5	Q5HYW3	569 aa	Predicted RBP	7.05	□□□□□ -1.28
SYNE2-223	ENST00000557005	RB1CC1	Q8TDY2	1594 aa		7.04	□□□□□ -1.28
SYNE2-223	ENST00000557005	DAXX	Q9UER7	740 aa	Predicted RBP	7.03	□□□□□ -1.28
SYNE2-223	ENST00000557005	PABPN1	Q86U42	306 aa	Known RBP eCLIP	7.02	□□□□□ -1.29
SYNE2-223	ENST00000557005	RSF1	Q96T23	1441 aa	Predicted RBP	7.02	□□□□□ -1.29
SYNE2-223	ENST00000557005	CEP162	Q5TB80	1403 aa		7.01	□□□□□ -1.29
SYNE2-223	ENST00000557005	CSRNP3	Q8WYN3	585 aa		7	□□□□□ -1.29
SYNE2-223	ENST00000557005	ANP32E	Q9BTT0	268 aa		7	□□□□□ -1.29
SYNE2-223	ENST00000557005	CLSPN	Q9HAW4	1339 aa		6.99	□□□□□ -1.29
SYNE2-223	ENST00000557005	IRX6	P78412	446 aa	Predicted RBP	6.99	□□□□□ -1.29
SYNE2-223	ENST00000557005	SUPT16H	Q9Y5B9	1047 aa	Known RBP	6.99	□□□□□ -1.29
SYNE2-223	ENST00000557005	TRIM52	Q96A61	297 aa		6.98	□□□□□ -1.29
SYNE2-223	ENST00000557005	DDX10	Q13206	875 aa	Known RBP	6.97	□□□□□ -1.29
SYNE2-223	ENST00000557005	NBR1	Q14596	966 aa		6.97	□□□□□ -1.29
SYNE2-223	ENST00000557005	NPM2	Q86SE8	214 aa	Known RBP	6.96	□□□□□ -1.29
SYNE2-223	ENST00000557005	HIRIP3	Q9BW71	556 aa	Predicted RBP	6.95	□□□□□ -1.3
SYNE2-223	ENST00000557005	P3H3	Q8IVL6	736 aa		6.95	□□□□□ -1.3
SYNE2-223	ENST00000557005	GOLGA3	Q08378	1498 aa		6.94	□□□□□ -1.3
SYNE2-223	ENST00000557005	ABCC8	Q09428	1581 aa		6.93	□□□□□ -1.3
SYNE2-223	ENST00000557005	BCL11A	Q9H165	835 aa		6.93	□□□□□ -1.3
SYNE2-223	ENST00000557005	ZNF326	Q5BKZ1	582 aa	Known RBP	6.92	□□□□□ -1.3
SYNE2-223	ENST00000557005	CLIP1	P30622	1438 aa		6.92	□□□□□ -1.3
SYNE2-223	ENST00000557005	HNRNPU	Q00839	825 aa	Known RBP eCLIP	6.91	□□□□□ -1.3
SYNE2-223	ENST00000557005	ANP32A	P39687	249 aa	Known RBP	6.91	□□□□□ -1.3
SYNE2-223	ENST00000557005	WIZ	O95785	1651 aa		6.89	□□□□□ -1.31
SYNE2-223	ENST00000557005	FAM9B	Q8IZU0	186 aa		6.89	□□□□□ -1.31
SYNE2-223	ENST00000557005	SOGA1	O94964	1423 aa		6.88	□□□□□ -1.31
SYNE2-223	ENST00000557005	TNIK	Q9UKE5	1360 aa		6.88	□□□□□ -1.31
SYNE2-223	ENST00000557005	ARID3C	A6NKF2	412 aa		6.87	□□□□□ -1.31
SYNE2-223	ENST00000557005	TONSL	Q96HA7	1378 aa		6.86	□□□□□ -1.31
SYNE2-223	ENST00000557005	CECR2	Q9BXF3	1484 aa		6.86	□□□□□ -1.31
SYNE2-223	ENST00000557005	TSHZ2	Q9NRE2	1034 aa		6.86	□□□□□ -1.31
SYNE2-223	ENST00000557005	MROH2B	Q7Z745	1585 aa		6.84	□□□□□ -1.31
SYNE2-223	ENST00000557005	CCDC88B	A6NC98	1476 aa		6.84	□□□□□ -1.32
SYNE2-223	ENST00000557005	SENP3-EIF4A1	A0A087X0R7	540 aa		6.83	□□□□□ -1.32
SYNE2-223	ENST00000557005	SLC4A1AP	Q9BWU0	796 aa	Known RBP	6.82	□□□□□ -1.32
SYNE2-223	ENST00000557005	CEP164	Q9UPV0	1460 aa		6.82	□□□□□ -1.32
SYNE2-223	ENST00000557005	EIF5B	O60841	1220 aa	Known RBP	6.82	□□□□□ -1.32
SYNE2-223	ENST00000557005	RBM19	Q9Y4C8	960 aa	Known RBP	6.81	□□□□□ -1.32
SYNE2-223	ENST00000557005	RTN4	Q9NQC3	1192 aa	Known RBP	6.81	□□□□□ -1.32
SYNE2-223	ENST00000557005	ZBTB47	Q9UFB7	747 aa	Predicted RBP	6.81	□□□□□ -1.32
SYNE2-223	ENST00000557005	SIN3A	Q96ST3	1273 aa		6.8	□□□□□ -1.32
SYNE2-223	ENST00000557005	SALL2	Q9Y467	1007 aa	Predicted RBP	6.8	□□□□□ -1.32
SYNE2-223	ENST00000557005	WRN	Q14191	1432 aa	Predicted RBP eCLIP	6.8	□□□□□ -1.32
SYNE2-223	ENST00000557005	EEA1	Q15075	1411 aa		6.8	□□□□□ -1.32
SYNE2-223	ENST00000557005	CHIC2	Q9UKJ5	165 aa		6.79	□□□□□ -1.32
SYNE2-223	ENST00000557005	MYT1L	Q9UL68	1186 aa		6.79	□□□□□ -1.32
SYNE2-223	ENST00000557005	CCDC136	Q96JN2	1154 aa		6.79	□□□□□ -1.32
SYNE2-223	ENST00000557005	KCNH8	Q96L42	1107 aa		6.79	□□□□□ -1.32
SYNE2-223	ENST00000557005	MRS2	Q9HD23	443 aa		6.77	□□□□□ -1.32
SYNE2-223	ENST00000557005	DEK	P35659	375 aa	Known RBP	6.77	□□□□□ -1.33

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