RNA–Protein interactions for RNA: ENST00000556220.5

ATXN3-236, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-236ENST00000556220 AEBP2Q6ZN18 517 aaPredicted RBP26.38■■□□□ 1.81
ATXN3-236ENST00000556220 CHIC1Q5VXU3 224 aa25.25■■□□□ 1.63
ATXN3-236ENST00000556220 SENP3Q9H4L4 574 aaPredicted RBP22.55■■□□□ 1.2
ATXN3-236ENST00000556220 PHF23Q9BUL5 403 aaPredicted RBP22.26■■□□□ 1.15
ATXN3-236ENST00000556220 FOXD1Q16676 465 aa20.95■□□□□ 0.94
ATXN3-236ENST00000556220 PLPPR3Q6T4P5 718 aa20.27■□□□□ 0.84
ATXN3-236ENST00000556220 PPP6R1Q9UPN7 881 aa19.69■□□□□ 0.74
ATXN3-236ENST00000556220 ADRA2BP18089 450 aa19.64■□□□□ 0.73
ATXN3-236ENST00000556220 PIAS4Q8N2W9 510 aaPredicted RBP19.62■□□□□ 0.73
ATXN3-236ENST00000556220 MSH5O43196 834 aa19.61■□□□□ 0.73
ATXN3-236ENST00000556220 POTEDQ86YR6 584 aa18.82■□□□□ 0.6
ATXN3-236ENST00000556220 SCAF1Q9H7N4 1312 aaKnown RBP18.07■□□□□ 0.48
ATXN3-236ENST00000556220 MAPK8IP2Q13387 824 aaPredicted RBP17.98■□□□□ 0.47
ATXN3-236ENST00000556220 DMRT2Q9Y5R5 561 aa17.9■□□□□ 0.46
ATXN3-236ENST00000556220 PPP4R3CPQ6ZMV5 832 aa17.76■□□□□ 0.43
ATXN3-236ENST00000556220 NISCHQ9Y2I1 1504 aa17.55■□□□□ 0.4
ATXN3-236ENST00000556220 CNKSR2Q8WXI2 1034 aa17.42■□□□□ 0.38
ATXN3-236ENST00000556220 HOXD11P31277 338 aaPredicted RBP17.31■□□□□ 0.36
ATXN3-236ENST00000556220 RNF216Q9NWF9 866 aaPredicted RBP17.23■□□□□ 0.35
ATXN3-236ENST00000556220 NCBP3Q53F19 620 aaKnown RBP17.18■□□□□ 0.34
ATXN3-236ENST00000556220 DCAF8L1A6NGE4 600 aa17.11■□□□□ 0.33
ATXN3-236ENST00000556220 NPM3O75607 178 aaKnown RBP16.87■□□□□ 0.29
ATXN3-236ENST00000556220 DNAJC5BQ9UF47 199 aa16.76■□□□□ 0.27
ATXN3-236ENST00000556220 RNF39Q9H2S5 420 aa16.72■□□□□ 0.27
ATXN3-236ENST00000556220 CACNB1Q02641 598 aaPredicted RBP16.7■□□□□ 0.26
ATXN3-236ENST00000556220 KCNA4P22459 653 aa16.66■□□□□ 0.26
ATXN3-236ENST00000556220 C1QBPQ07021 282 aaKnown RBP16.52■□□□□ 0.24
ATXN3-236ENST00000556220 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.48■□□□□ 0.23
ATXN3-236ENST00000556220 ABCC9O60706 1549 aa16.36■□□□□ 0.21
ATXN3-236ENST00000556220 U3KPZ7 1027 aaPredicted RBP16.12■□□□□ 0.17
ATXN3-236ENST00000556220 SLC4A2P04920 1241 aa16.06■□□□□ 0.16
ATXN3-236ENST00000556220 SPINK5Q9NQ38 1064 aaPredicted RBP15.83■□□□□ 0.12
ATXN3-236ENST00000556220 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.81■□□□□ 0.12
ATXN3-236ENST00000556220 CAPN15O75808 1086 aa15.81■□□□□ 0.12
ATXN3-236ENST00000556220 HNRNPUL2Q1KMD3 747 aaKnown RBP15.81■□□□□ 0.12
ATXN3-236ENST00000556220 CCDC180Q9P1Z9 1646 aa15.8■□□□□ 0.12
ATXN3-236ENST00000556220 APLP2Q06481 763 aa15.79■□□□□ 0.12
ATXN3-236ENST00000556220 SLC4A1APQ9BWU0 796 aaKnown RBP15.78■□□□□ 0.12
ATXN3-236ENST00000556220 DSG3P32926 999 aa15.7■□□□□ 0.1
ATXN3-236ENST00000556220 SAMD1Q6SPF0 538 aaPredicted RBP15.7■□□□□ 0.1
ATXN3-236ENST00000556220 MYCNP04198 464 aaPredicted RBP15.63■□□□□ 0.09
ATXN3-236ENST00000556220 ZNF219Q9P2Y4 722 aaPredicted RBP15.62■□□□□ 0.09
ATXN3-236ENST00000556220 TRHP20396 242 aaPredicted RBP15.59■□□□□ 0.09
ATXN3-236ENST00000556220 FOXD4L1Q9NU39 408 aa15.54■□□□□ 0.08
ATXN3-236ENST00000556220 ABCB7O75027 752 aa15.42■□□□□ 0.06
ATXN3-236ENST00000556220 RB1CC1Q8TDY2 1594 aa15.33■□□□□ 0.05
ATXN3-236ENST00000556220 ZBTB22O15209 634 aa15.3■□□□□ 0.04
ATXN3-236ENST00000556220 PABPN1Q86U42 306 aaKnown RBP eCLIP15.26■□□□□ 0.03
ATXN3-236ENST00000556220 POLA2Q14181 598 aa15.23■□□□□ 0.03
ATXN3-236ENST00000556220 ATF5Q9Y2D1 282 aaPredicted RBP15.19■□□□□ 0.02
ATXN3-236ENST00000556220 NACADO15069 1562 aa15.15■□□□□ 0.02
ATXN3-236ENST00000556220 DCAF8L2P0C7V8 631 aa15.12■□□□□ 0.01
ATXN3-236ENST00000556220 ATXN8OSP0DMR3 200 aa15.1■□□□□ 0.01
ATXN3-236ENST00000556220 RBM42Q9BTD8 480 aaKnown RBP15.02■□□□□ -0
ATXN3-236ENST00000556220 ZBTB12Q9Y330 459 aaPredicted RBP14.99□□□□□ -0.01
ATXN3-236ENST00000556220 BICRAQ9NZM4 1560 aa14.9□□□□□ -0.02
ATXN3-236ENST00000556220 DNAJC5Q9H3Z4 198 aa14.89□□□□□ -0.03
ATXN3-236ENST00000556220 UNC13AQ9UPW8 1703 aa14.86□□□□□ -0.03
ATXN3-236ENST00000556220 MYO15BQ96JP2 1530 aa14.82□□□□□ -0.04
ATXN3-236ENST00000556220 CECR2Q9BXF3 1484 aa14.81□□□□□ -0.04
ATXN3-236ENST00000556220 POTEHQ6S545 545 aa14.79□□□□□ -0.04
ATXN3-236ENST00000556220 CSRNP3Q8WYN3 585 aa14.76□□□□□ -0.05
ATXN3-236ENST00000556220 CC2D2AQ9P2K1 1620 aa14.7□□□□□ -0.06
ATXN3-236ENST00000556220 OSCARQ8IYS5 282 aa14.7□□□□□ -0.06
ATXN3-236ENST00000556220 AKT1S1Q96B36 256 aa14.7□□□□□ -0.06
ATXN3-236ENST00000556220 SHROOM4Q9ULL8 1493 aa14.68□□□□□ -0.06
ATXN3-236ENST00000556220 FBLN2P98095 1184 aa14.66□□□□□ -0.06
ATXN3-236ENST00000556220 EHMT2Q96KQ7 1210 aa14.61□□□□□ -0.07
ATXN3-236ENST00000556220 CHRDL2Q6WN34 429 aa14.59□□□□□ -0.07
ATXN3-236ENST00000556220 EIF4G1Q04637 1599 aaKnown RBP14.58□□□□□ -0.08
ATXN3-236ENST00000556220 REM2Q8IYK8 340 aaPredicted RBP14.53□□□□□ -0.08
ATXN3-236ENST00000556220 SPDYE2BA6NHP3 402 aa14.51□□□□□ -0.09
ATXN3-236ENST00000556220 SPDYE6P0CI01 402 aa14.51□□□□□ -0.09
ATXN3-236ENST00000556220 MKRN4PQ13434 485 aaPredicted RBP14.51□□□□□ -0.09
ATXN3-236ENST00000556220 SPDYE2Q495Y8 402 aa14.51□□□□□ -0.09
ATXN3-236ENST00000556220 DCAF1Q9Y4B6 1507 aa14.46□□□□□ -0.1
ATXN3-236ENST00000556220 ZCCHC6Q5VYS8 1495 aaKnown RBP14.43□□□□□ -0.1
ATXN3-236ENST00000556220 SCRIBQ14160 1630 aa14.42□□□□□ -0.1
ATXN3-236ENST00000556220 PITPNM1O00562 1244 aa14.35□□□□□ -0.11
ATXN3-236ENST00000556220 ZNF692Q9BU19 519 aaPredicted RBP14.35□□□□□ -0.11
ATXN3-236ENST00000556220 SSUH2Q9Y2M2 353 aa14.32□□□□□ -0.12
ATXN3-236ENST00000556220 CUX2O14529 1486 aa14.28□□□□□ -0.12
ATXN3-236ENST00000556220 PIP4P2Q8N4L2 257 aa14.26□□□□□ -0.13
ATXN3-236ENST00000556220 FXR2P51116 673 aaKnown RBP eCLIP14.23□□□□□ -0.13
ATXN3-236ENST00000556220 SPDYE1Q8NFV5 336 aaPredicted RBP14.23□□□□□ -0.13
ATXN3-236ENST00000556220 ERCC6Q03468 1493 aa14.16□□□□□ -0.14
ATXN3-236ENST00000556220 CLEC11AQ9Y240 323 aa14.15□□□□□ -0.14
ATXN3-236ENST00000556220 NCAPD3P42695 1498 aa14.06□□□□□ -0.16
ATXN3-236ENST00000556220 TRIM41Q8WV44 630 aa14.01□□□□□ -0.17
ATXN3-236ENST00000556220 PRKAR2AP13861 404 aaKnown RBP13.99□□□□□ -0.17
ATXN3-236ENST00000556220 HAX1O00165 279 aa13.98□□□□□ -0.17
ATXN3-236ENST00000556220 PRR29P0C7W0 189 aa13.97□□□□□ -0.17
ATXN3-236ENST00000556220 SP7Q8TDD2 431 aaPredicted RBP13.95□□□□□ -0.18
ATXN3-236ENST00000556220 SPDYE4A6NLX3 237 aa13.94□□□□□ -0.18
ATXN3-236ENST00000556220 ATAD2BQ9ULI0 1458 aa13.93□□□□□ -0.18
ATXN3-236ENST00000556220 NESP48681 1621 aa13.93□□□□□ -0.18
ATXN3-236ENST00000556220 STAG3Q9UJ98 1225 aa13.84□□□□□ -0.19
ATXN3-236ENST00000556220 CHADLQ6NUI6 762 aa13.83□□□□□ -0.2
ATXN3-236ENST00000556220 HMGXB3Q12766 1538 aa13.82□□□□□ -0.2
ATXN3-236ENST00000556220 SMARCA2P51531 1590 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 155.5 ms