RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 DCAF8L2P0C7V8 631 aa14.8□□□□□ -0.04
SYNE2-220ENST00000555612 NISCHQ9Y2I1 1504 aa14.14□□□□□ -0.15
SYNE2-220ENST00000555612 SUPT5HO00267 1087 aaKnown RBP13.71□□□□□ -0.22
SYNE2-220ENST00000555612 SHROOM4Q9ULL8 1493 aa13.53□□□□□ -0.24
SYNE2-220ENST00000555612 EHMT2Q96KQ7 1210 aa13.44□□□□□ -0.26
SYNE2-220ENST00000555612 APLP2Q06481 763 aa13.09□□□□□ -0.31
SYNE2-220ENST00000555612 FAM9AQ8IZU1 332 aaPredicted RBP13.07□□□□□ -0.32
SYNE2-220ENST00000555612 TTBK1Q5TCY1 1321 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-220ENST00000555612 RANGAP1P46060 587 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-220ENST00000555612 ATP1B4Q9UN42 357 aaPredicted RBP12.83□□□□□ -0.36
SYNE2-220ENST00000555612 TRIM41Q8WV44 630 aa12.66□□□□□ -0.38
SYNE2-220ENST00000555612 PELP1Q8IZL8 1130 aaKnown RBP12.62□□□□□ -0.39
SYNE2-220ENST00000555612 UBTFP17480 764 aaKnown RBP12.61□□□□□ -0.39
SYNE2-220ENST00000555612 PCGF6Q9BYE7 350 aa12.57□□□□□ -0.4
SYNE2-220ENST00000555612 MYT1LQ9UL68 1186 aa12.48□□□□□ -0.41
SYNE2-220ENST00000555612 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.43□□□□□ -0.42
SYNE2-220ENST00000555612 HNRNPUL2Q1KMD3 747 aaKnown RBP12.43□□□□□ -0.42
SYNE2-220ENST00000555612 CCER1Q8TC90 406 aaPredicted RBP12.4□□□□□ -0.42
SYNE2-220ENST00000555612 PPARGC1BQ86YN6 1023 aaKnown RBP12.31□□□□□ -0.44
SYNE2-220ENST00000555612 CHIC1Q5VXU3 224 aa12.28□□□□□ -0.44
SYNE2-220ENST00000555612 ITGAEP38570 1179 aa12.25□□□□□ -0.45
SYNE2-220ENST00000555612 PABPN1Q86U42 306 aaKnown RBP eCLIP12.22□□□□□ -0.45
SYNE2-220ENST00000555612 ABCC9O60706 1549 aa12.2□□□□□ -0.46
SYNE2-220ENST00000555612 POLR3GLQ9BT43 218 aa12.18□□□□□ -0.46
SYNE2-220ENST00000555612 ZEB1P37275 1124 aaPredicted RBP12.18□□□□□ -0.46
SYNE2-220ENST00000555612 ERICH6Q7L0X2 663 aa12.16□□□□□ -0.46
SYNE2-220ENST00000555612 CENPBP07199 599 aaPredicted RBP12.15□□□□□ -0.46
SYNE2-220ENST00000555612 CCDC180Q9P1Z9 1646 aa12.14□□□□□ -0.47
SYNE2-220ENST00000555612 YTHDC1Q96MU7 727 aaKnown RBP12.1□□□□□ -0.47
SYNE2-220ENST00000555612 NEFLP07196 543 aa12.07□□□□□ -0.48
SYNE2-220ENST00000555612 CNGB1Q14028 1251 aaPredicted RBP12.06□□□□□ -0.48
SYNE2-220ENST00000555612 SLC4A1APQ9BWU0 796 aaKnown RBP12.06□□□□□ -0.48
SYNE2-220ENST00000555612 FBLN2P98095 1184 aa12.04□□□□□ -0.48
SYNE2-220ENST00000555612 DCAF1Q9Y4B6 1507 aa12□□□□□ -0.49
SYNE2-220ENST00000555612 LOC105371045A0A1W2PR82 267 aa11.95□□□□□ -0.5
SYNE2-220ENST00000555612 MYO15BQ96JP2 1530 aa11.94□□□□□ -0.5
SYNE2-220ENST00000555612 FAM50AQ14320 339 aaKnown RBP11.91□□□□□ -0.5
SYNE2-220ENST00000555612 ZCCHC6Q5VYS8 1495 aaKnown RBP11.91□□□□□ -0.5
SYNE2-220ENST00000555612 TRIM26Q12899 539 aaPredicted RBP11.9□□□□□ -0.5
SYNE2-220ENST00000555612 HRCP23327 699 aa11.88□□□□□ -0.51
SYNE2-220ENST00000555612 TRIM52Q96A61 297 aa11.88□□□□□ -0.51
SYNE2-220ENST00000555612 ARID3CA6NKF2 412 aa11.82□□□□□ -0.52
SYNE2-220ENST00000555612 BCANQ96GW7 911 aa11.79□□□□□ -0.52
SYNE2-220ENST00000555612 DAXXQ9UER7 740 aaPredicted RBP11.78□□□□□ -0.52
SYNE2-220ENST00000555612 ZNF326Q5BKZ1 582 aaKnown RBP11.77□□□□□ -0.53
SYNE2-220ENST00000555612 P3H3Q8IVL6 736 aa11.74□□□□□ -0.53
SYNE2-220ENST00000555612 NEUROD1Q13562 356 aa11.73□□□□□ -0.53
SYNE2-220ENST00000555612 PLPPR3Q6T4P5 718 aa11.71□□□□□ -0.53
SYNE2-220ENST00000555612 ZNF777Q9ULD5 760 aaPredicted RBP11.68□□□□□ -0.54
SYNE2-220ENST00000555612 SLC24A1O60721 1099 aa11.68□□□□□ -0.54
SYNE2-220ENST00000555612 ESF1Q9H501 851 aaKnown RBP11.67□□□□□ -0.54
SYNE2-220ENST00000555612 CLSPNQ9HAW4 1339 aa11.65□□□□□ -0.55
SYNE2-220ENST00000555612 NPM1P06748 294 aaKnown RBP eCLIP11.61□□□□□ -0.55
SYNE2-220ENST00000555612 MYT1Q01538 1121 aa11.61□□□□□ -0.55
SYNE2-220ENST00000555612 STAG3Q9UJ98 1225 aa11.56□□□□□ -0.56
SYNE2-220ENST00000555612 CDK11AQ9UQ88 783 aaPredicted RBP11.56□□□□□ -0.56
SYNE2-220ENST00000555612 CHGAP10645 457 aaKnown RBP11.55□□□□□ -0.56
SYNE2-220ENST00000555612 SCRIBQ14160 1630 aa11.54□□□□□ -0.56
SYNE2-220ENST00000555612 BCL11AQ9H165 835 aa11.54□□□□□ -0.56
SYNE2-220ENST00000555612 NEFMP07197 916 aa11.51□□□□□ -0.57
SYNE2-220ENST00000555612 ZBTB47Q9UFB7 747 aaPredicted RBP11.51□□□□□ -0.57
SYNE2-220ENST00000555612 CSRNP3Q8WYN3 585 aa11.5□□□□□ -0.57
SYNE2-220ENST00000555612 NACADO15069 1562 aa11.5□□□□□ -0.57
SYNE2-220ENST00000555612 ZNF316A6NFI3 1004 aaPredicted RBP11.49□□□□□ -0.57
SYNE2-220ENST00000555612 DIEXFQ68CQ4 756 aaKnown RBP11.47□□□□□ -0.57
SYNE2-220ENST00000555612 CANXP27824 592 aaKnown RBP11.45□□□□□ -0.58
SYNE2-220ENST00000555612 ANP32CO43423 234 aa11.44□□□□□ -0.58
SYNE2-220ENST00000555612 CHMP7Q8WUX9 453 aaPredicted RBP11.42□□□□□ -0.58
SYNE2-220ENST00000555612 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.4□□□□□ -0.58
SYNE2-220ENST00000555612 SCAF1Q9H7N4 1312 aaKnown RBP11.37□□□□□ -0.59
SYNE2-220ENST00000555612 CHIC2Q9UKJ5 165 aa11.35□□□□□ -0.59
SYNE2-220ENST00000555612 SENP3Q9H4L4 574 aaPredicted RBP11.33□□□□□ -0.6
SYNE2-220ENST00000555612 RTL5Q5HYW3 569 aaPredicted RBP11.32□□□□□ -0.6
SYNE2-220ENST00000555612 A0A0G2JS52 829 aa11.32□□□□□ -0.6
SYNE2-220ENST00000555612 KCNH8Q96L42 1107 aa11.31□□□□□ -0.6
SYNE2-220ENST00000555612 PLEKHG5O94827 1062 aa11.31□□□□□ -0.6
SYNE2-220ENST00000555612 TSPY4P0CV99 314 aa11.29□□□□□ -0.6
SYNE2-220ENST00000555612 TSPY10P0CW01 314 aa11.29□□□□□ -0.6
SYNE2-220ENST00000555612 ARID4BQ4LE39 1312 aaPredicted RBP11.27□□□□□ -0.61
SYNE2-220ENST00000555612 RB1CC1Q8TDY2 1594 aa11.27□□□□□ -0.61
SYNE2-220ENST00000555612 TONSLQ96HA7 1378 aa11.26□□□□□ -0.61
SYNE2-220ENST00000555612 ZBTB7CA1YPR0 619 aa11.26□□□□□ -0.61
SYNE2-220ENST00000555612 C14orf37Q86TY3 774 aa11.25□□□□□ -0.61
SYNE2-220ENST00000555612 PPP1R15AO75807 674 aaPredicted RBP11.24□□□□□ -0.61
SYNE2-220ENST00000555612 KDM2AQ9Y2K7 1162 aa11.23□□□□□ -0.61
SYNE2-220ENST00000555612 MTUS2Q5JR59 1369 aa11.22□□□□□ -0.61
SYNE2-220ENST00000555612 ERCC6Q03468 1493 aa11.19□□□□□ -0.62
SYNE2-220ENST00000555612 TRHP20396 242 aaPredicted RBP11.18□□□□□ -0.62
SYNE2-220ENST00000555612 SALL2Q9Y467 1007 aaPredicted RBP11.18□□□□□ -0.62
SYNE2-220ENST00000555612 PLEKHD1A6NEE1 506 aa11.17□□□□□ -0.62
SYNE2-220ENST00000555612 HAP1P54257 671 aaPredicted RBP11.16□□□□□ -0.62
SYNE2-220ENST00000555612 NPM2Q86SE8 214 aaKnown RBP11.14□□□□□ -0.63
SYNE2-220ENST00000555612 FAM9BQ8IZU0 186 aa11.13□□□□□ -0.63
SYNE2-220ENST00000555612 RRP7BPQ9NSQ0 103 aa11.13□□□□□ -0.63
SYNE2-220ENST00000555612 WDR43Q15061 677 aaKnown RBP eCLIP11.09□□□□□ -0.63
SYNE2-220ENST00000555612 DDX10Q13206 875 aaKnown RBP11.09□□□□□ -0.63
SYNE2-220ENST00000555612 BAZ1BQ9UIG0 1483 aaKnown RBP11.08□□□□□ -0.64
SYNE2-220ENST00000555612 GTF3C3Q9Y5Q9 886 aa11.08□□□□□ -0.64
SYNE2-220ENST00000555612 TMC1Q8TDI8 760 aa11.08□□□□□ -0.64
SYNE2-220ENST00000555612 RGL3Q3MIN7 710 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms