RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 NISCHQ9Y2I1 1504 aa16.28■□□□□ 0.2
SYNE2-217ENST00000555022 SHROOM4Q9ULL8 1493 aa15.35■□□□□ 0.05
SYNE2-217ENST00000555022 SUPT5HO00267 1087 aaKnown RBP15.27■□□□□ 0.04
SYNE2-217ENST00000555022 PPARGC1BQ86YN6 1023 aaKnown RBP15.14■□□□□ 0.01
SYNE2-217ENST00000555022 PCGF6Q9BYE7 350 aa15.04■□□□□ -0
SYNE2-217ENST00000555022 HRCP23327 699 aa14.96□□□□□ -0.02
SYNE2-217ENST00000555022 DCAF8L2P0C7V8 631 aa14.68□□□□□ -0.06
SYNE2-217ENST00000555022 MYO15BQ96JP2 1530 aa14.67□□□□□ -0.06
SYNE2-217ENST00000555022 LOC105371045A0A1W2PR82 267 aa14.6□□□□□ -0.07
SYNE2-217ENST00000555022 CHIC1Q5VXU3 224 aa14.59□□□□□ -0.07
SYNE2-217ENST00000555022 EHMT2Q96KQ7 1210 aa14.58□□□□□ -0.08
SYNE2-217ENST00000555022 SCAF1Q9H7N4 1312 aaKnown RBP14.32□□□□□ -0.12
SYNE2-217ENST00000555022 FAM9AQ8IZU1 332 aaPredicted RBP14.29□□□□□ -0.12
SYNE2-217ENST00000555022 TRIM26Q12899 539 aaPredicted RBP14.17□□□□□ -0.14
SYNE2-217ENST00000555022 TTBK1Q5TCY1 1321 aaPredicted RBP14.15□□□□□ -0.14
SYNE2-217ENST00000555022 PELP1Q8IZL8 1130 aaKnown RBP14.09□□□□□ -0.15
SYNE2-217ENST00000555022 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.98□□□□□ -0.17
SYNE2-217ENST00000555022 NEUROD1Q13562 356 aa13.98□□□□□ -0.17
SYNE2-217ENST00000555022 YTHDC1Q96MU7 727 aaKnown RBP13.96□□□□□ -0.18
SYNE2-217ENST00000555022 DCAF1Q9Y4B6 1507 aa13.94□□□□□ -0.18
SYNE2-217ENST00000555022 GTF3C3Q9Y5Q9 886 aa13.94□□□□□ -0.18
SYNE2-217ENST00000555022 ZEB1P37275 1124 aaPredicted RBP13.86□□□□□ -0.19
SYNE2-217ENST00000555022 CCER1Q8TC90 406 aaPredicted RBP13.86□□□□□ -0.19
SYNE2-217ENST00000555022 TRIM41Q8WV44 630 aa13.85□□□□□ -0.19
SYNE2-217ENST00000555022 ACIN1Q9UKV3 1341 aaKnown RBP13.84□□□□□ -0.19
SYNE2-217ENST00000555022 ZCCHC6Q5VYS8 1495 aaKnown RBP13.77□□□□□ -0.2
SYNE2-217ENST00000555022 DIEXFQ68CQ4 756 aaKnown RBP13.73□□□□□ -0.21
SYNE2-217ENST00000555022 CCDC180Q9P1Z9 1646 aa13.73□□□□□ -0.21
SYNE2-217ENST00000555022 CENPBP07199 599 aaPredicted RBP13.68□□□□□ -0.22
SYNE2-217ENST00000555022 RANGAP1P46060 587 aaPredicted RBP13.46□□□□□ -0.25
SYNE2-217ENST00000555022 MIER1Q8N108 512 aa13.45□□□□□ -0.26
SYNE2-217ENST00000555022 HNRNPUL2Q1KMD3 747 aaKnown RBP13.44□□□□□ -0.26
SYNE2-217ENST00000555022 MYT1Q01538 1121 aa13.38□□□□□ -0.27
SYNE2-217ENST00000555022 ZNF316A6NFI3 1004 aaPredicted RBP13.35□□□□□ -0.27
SYNE2-217ENST00000555022 BCANQ96GW7 911 aa13.32□□□□□ -0.28
SYNE2-217ENST00000555022 RB1CC1Q8TDY2 1594 aa13.29□□□□□ -0.28
SYNE2-217ENST00000555022 UBTFP17480 764 aaKnown RBP13.29□□□□□ -0.28
SYNE2-217ENST00000555022 RSF1Q96T23 1441 aaPredicted RBP13.28□□□□□ -0.28
SYNE2-217ENST00000555022 SCRIBQ14160 1630 aa13.22□□□□□ -0.29
SYNE2-217ENST00000555022 ABCC9O60706 1549 aa13.16□□□□□ -0.3
SYNE2-217ENST00000555022 SUPT16HQ9Y5B9 1047 aaKnown RBP13.12□□□□□ -0.31
SYNE2-217ENST00000555022 BCL11AQ9H165 835 aa13.1□□□□□ -0.31
SYNE2-217ENST00000555022 KCNH8Q96L42 1107 aa13.08□□□□□ -0.32
SYNE2-217ENST00000555022 ITGAEP38570 1179 aa13.07□□□□□ -0.32
SYNE2-217ENST00000555022 CECR2Q9BXF3 1484 aa13.07□□□□□ -0.32
SYNE2-217ENST00000555022 CSRNP3Q8WYN3 585 aa13.06□□□□□ -0.32
SYNE2-217ENST00000555022 TSHZ2Q9NRE2 1034 aa13.06□□□□□ -0.32
SYNE2-217ENST00000555022 CEP162Q5TB80 1403 aa13.03□□□□□ -0.32
SYNE2-217ENST00000555022 ANP32EQ9BTT0 268 aa13□□□□□ -0.33
SYNE2-217ENST00000555022 SOGA1O94964 1423 aa12.99□□□□□ -0.33
SYNE2-217ENST00000555022 APLP2Q06481 763 aa12.99□□□□□ -0.33
SYNE2-217ENST00000555022 ABCC8Q09428 1581 aa12.98□□□□□ -0.33
SYNE2-217ENST00000555022 FKBP8Q14318 412 aa12.97□□□□□ -0.33
SYNE2-217ENST00000555022 HIRIP3Q9BW71 556 aaPredicted RBP12.96□□□□□ -0.34
SYNE2-217ENST00000555022 CCDC88BA6NC98 1476 aa12.95□□□□□ -0.34
SYNE2-217ENST00000555022 RUSC2Q8N2Y8 1516 aa12.94□□□□□ -0.34
SYNE2-217ENST00000555022 MROH2BQ7Z745 1585 aa12.92□□□□□ -0.34
SYNE2-217ENST00000555022 TRIM52Q96A61 297 aa12.89□□□□□ -0.35
SYNE2-217ENST00000555022 IRX6P78412 446 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-217ENST00000555022 WIZO95785 1651 aa12.87□□□□□ -0.35
SYNE2-217ENST00000555022 DDX10Q13206 875 aaKnown RBP12.83□□□□□ -0.36
SYNE2-217ENST00000555022 NEFLP07196 543 aa12.78□□□□□ -0.36
SYNE2-217ENST00000555022 RBM19Q9Y4C8 960 aaKnown RBP12.77□□□□□ -0.36
SYNE2-217ENST00000555022 TNIKQ9UKE5 1360 aa12.77□□□□□ -0.37
SYNE2-217ENST00000555022 ERICH6Q7L0X2 663 aa12.76□□□□□ -0.37
SYNE2-217ENST00000555022 CNGB1Q14028 1251 aaPredicted RBP12.75□□□□□ -0.37
SYNE2-217ENST00000555022 WRNQ14191 1432 aaPredicted RBP eCLIP12.74□□□□□ -0.37
SYNE2-217ENST00000555022 SENP3-EIF4A1A0A087X0R7 540 aa12.72□□□□□ -0.37
SYNE2-217ENST00000555022 CLIP1P30622 1438 aa12.71□□□□□ -0.37
SYNE2-217ENST00000555022 KANK4Q5T7N3 995 aaPredicted RBP12.71□□□□□ -0.37
SYNE2-217ENST00000555022 ATP1B4Q9UN42 357 aaPredicted RBP12.71□□□□□ -0.38
SYNE2-217ENST00000555022 PABPN1Q86U42 306 aaKnown RBP eCLIP12.69□□□□□ -0.38
SYNE2-217ENST00000555022 SIN3AQ96ST3 1273 aa12.69□□□□□ -0.38
SYNE2-217ENST00000555022 MSH5O43196 834 aa12.68□□□□□ -0.38
SYNE2-217ENST00000555022 DHX57Q6P158 1386 aaKnown RBP12.66□□□□□ -0.38
SYNE2-217ENST00000555022 GOLGA3Q08378 1498 aa12.64□□□□□ -0.39
SYNE2-217ENST00000555022 NBR1Q14596 966 aa12.63□□□□□ -0.39
SYNE2-217ENST00000555022 FAM50AQ14320 339 aaKnown RBP12.6□□□□□ -0.39
SYNE2-217ENST00000555022 HNRNPUQ00839 825 aaKnown RBP eCLIP12.56□□□□□ -0.4
SYNE2-217ENST00000555022 NACADO15069 1562 aa12.56□□□□□ -0.4
SYNE2-217ENST00000555022 CLSPNQ9HAW4 1339 aa12.56□□□□□ -0.4
SYNE2-217ENST00000555022 P3H3Q8IVL6 736 aa12.55□□□□□ -0.4
SYNE2-217ENST00000555022 RAPGEF2Q9Y4G8 1499 aa12.55□□□□□ -0.4
SYNE2-217ENST00000555022 VPS8Q8N3P4 1428 aa12.54□□□□□ -0.4
SYNE2-217ENST00000555022 ANP32CO43423 234 aa12.53□□□□□ -0.4
SYNE2-217ENST00000555022 RTN4Q9NQC3 1192 aaKnown RBP12.53□□□□□ -0.4
SYNE2-217ENST00000555022 CDK11AQ9UQ88 783 aaPredicted RBP12.51□□□□□ -0.41
SYNE2-217ENST00000555022 BAZ1BQ9UIG0 1483 aaKnown RBP12.51□□□□□ -0.41
SYNE2-217ENST00000555022 DNAJC5BQ9UF47 199 aa12.5□□□□□ -0.41
SYNE2-217ENST00000555022 BAZ1AQ9NRL2 1556 aaPredicted RBP12.5□□□□□ -0.41
SYNE2-217ENST00000555022 B4GALNT3Q6L9W6 998 aa12.49□□□□□ -0.41
SYNE2-217ENST00000555022 DEKP35659 375 aaKnown RBP12.49□□□□□ -0.41
SYNE2-217ENST00000555022 DNAJC5Q9H3Z4 198 aa12.48□□□□□ -0.41
SYNE2-217ENST00000555022 CCDC136Q96JN2 1154 aa12.47□□□□□ -0.41
SYNE2-217ENST00000555022 EIF4G1Q04637 1599 aaKnown RBP12.47□□□□□ -0.41
SYNE2-217ENST00000555022 CEP164Q9UPV0 1460 aa12.46□□□□□ -0.41
SYNE2-217ENST00000555022 PRKCSHP14314 528 aaPredicted RBP12.46□□□□□ -0.41
SYNE2-217ENST00000555022 ANO8Q9HCE9 1232 aaPredicted RBP12.44□□□□□ -0.42
SYNE2-217ENST00000555022 RAB3GAP2Q9H2M9 1393 aa12.44□□□□□ -0.42
SYNE2-217ENST00000555022 FAM9BQ8IZU0 186 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms