RNA–Protein interactions for RNA: ENST00000554270.5

PTPN21-205, Transcript of protein tyrosine phosphatase, non-receptor type 21, humanhuman

TSL 1 (best)

Gene PTPN21, Length 4,008 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN21-205ENST00000554270 NISCHQ9Y2I1 1504 aa22.21■■□□□ 1.15
PTPN21-205ENST00000554270 SHROOM4Q9ULL8 1493 aa20.18■□□□□ 0.82
PTPN21-205ENST00000554270 DCAF8L2P0C7V8 631 aa20.01■□□□□ 0.79
PTPN21-205ENST00000554270 SUPT5HO00267 1087 aaKnown RBP19.96■□□□□ 0.79
PTPN21-205ENST00000554270 PCGF6Q9BYE7 350 aa18.98■□□□□ 0.63
PTPN21-205ENST00000554270 EHMT2Q96KQ7 1210 aa18.86■□□□□ 0.61
PTPN21-205ENST00000554270 CHIC1Q5VXU3 224 aa18.86■□□□□ 0.61
PTPN21-205ENST00000554270 LOC105371045A0A1W2PR82 267 aa18.7■□□□□ 0.58
PTPN21-205ENST00000554270 ZCCHC6Q5VYS8 1495 aaKnown RBP18.67■□□□□ 0.58
PTPN21-205ENST00000554270 PPARGC1BQ86YN6 1023 aaKnown RBP18.66■□□□□ 0.58
PTPN21-205ENST00000554270 FAM9AQ8IZU1 332 aaPredicted RBP18.63■□□□□ 0.57
PTPN21-205ENST00000554270 HRCP23327 699 aa18.6■□□□□ 0.57
PTPN21-205ENST00000554270 MYO15BQ96JP2 1530 aa18.55■□□□□ 0.56
PTPN21-205ENST00000554270 TRIM41Q8WV44 630 aa18.32■□□□□ 0.52
PTPN21-205ENST00000554270 CCDC180Q9P1Z9 1646 aa18.31■□□□□ 0.52
PTPN21-205ENST00000554270 TTBK1Q5TCY1 1321 aaPredicted RBP18.22■□□□□ 0.51
PTPN21-205ENST00000554270 TRIM26Q12899 539 aaPredicted RBP18.09■□□□□ 0.49
PTPN21-205ENST00000554270 ABCC9O60706 1549 aa18.04■□□□□ 0.48
PTPN21-205ENST00000554270 SCRIBQ14160 1630 aa17.99■□□□□ 0.47
PTPN21-205ENST00000554270 RSF1Q96T23 1441 aaPredicted RBP17.82■□□□□ 0.44
PTPN21-205ENST00000554270 CCER1Q8TC90 406 aaPredicted RBP17.79■□□□□ 0.44
PTPN21-205ENST00000554270 DCAF1Q9Y4B6 1507 aa17.77■□□□□ 0.43
PTPN21-205ENST00000554270 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.76■□□□□ 0.43
PTPN21-205ENST00000554270 RANGAP1P46060 587 aaPredicted RBP17.76■□□□□ 0.43
PTPN21-205ENST00000554270 ZEB1P37275 1124 aaPredicted RBP17.74■□□□□ 0.43
PTPN21-205ENST00000554270 CECR2Q9BXF3 1484 aa17.66■□□□□ 0.42
PTPN21-205ENST00000554270 PABPN1Q86U42 306 aaKnown RBP eCLIP17.65■□□□□ 0.42
PTPN21-205ENST00000554270 UBTFP17480 764 aaKnown RBP17.64■□□□□ 0.42
PTPN21-205ENST00000554270 RB1CC1Q8TDY2 1594 aa17.61■□□□□ 0.41
PTPN21-205ENST00000554270 YTHDC1Q96MU7 727 aaKnown RBP17.52■□□□□ 0.39
PTPN21-205ENST00000554270 MROH2BQ7Z745 1585 aa17.45■□□□□ 0.38
PTPN21-205ENST00000554270 SCAF1Q9H7N4 1312 aaKnown RBP17.41■□□□□ 0.38
PTPN21-205ENST00000554270 HNRNPUL2Q1KMD3 747 aaKnown RBP17.38■□□□□ 0.37
PTPN21-205ENST00000554270 DIEXFQ68CQ4 756 aaKnown RBP17.34■□□□□ 0.37
PTPN21-205ENST00000554270 WIZO95785 1651 aa17.31■□□□□ 0.36
PTPN21-205ENST00000554270 APLP2Q06481 763 aa17.31■□□□□ 0.36
PTPN21-205ENST00000554270 CENPBP07199 599 aaPredicted RBP17.3■□□□□ 0.36
PTPN21-205ENST00000554270 GTF3C3Q9Y5Q9 886 aa17.25■□□□□ 0.35
PTPN21-205ENST00000554270 CSRNP3Q8WYN3 585 aa17.24■□□□□ 0.35
PTPN21-205ENST00000554270 NEUROD1Q13562 356 aa17.24■□□□□ 0.35
PTPN21-205ENST00000554270 NACADO15069 1562 aa17.22■□□□□ 0.35
PTPN21-205ENST00000554270 ABCC8Q09428 1581 aa17.21■□□□□ 0.35
PTPN21-205ENST00000554270 PELP1Q8IZL8 1130 aaKnown RBP17.18■□□□□ 0.34
PTPN21-205ENST00000554270 SOGA1O94964 1423 aa17.17■□□□□ 0.34
PTPN21-205ENST00000554270 ACIN1Q9UKV3 1341 aaKnown RBP17.16■□□□□ 0.34
PTPN21-205ENST00000554270 CCDC88BA6NC98 1476 aa17.15■□□□□ 0.34
PTPN21-205ENST00000554270 ITGAEP38570 1179 aa17.1■□□□□ 0.33
PTPN21-205ENST00000554270 CEP162Q5TB80 1403 aa17.08■□□□□ 0.32
PTPN21-205ENST00000554270 BAZ1AQ9NRL2 1556 aaPredicted RBP17.05■□□□□ 0.32
PTPN21-205ENST00000554270 RUSC2Q8N2Y8 1516 aa17.04■□□□□ 0.32
PTPN21-205ENST00000554270 ATP1B4Q9UN42 357 aaPredicted RBP17.02■□□□□ 0.31
PTPN21-205ENST00000554270 ZNF316A6NFI3 1004 aaPredicted RBP16.98■□□□□ 0.31
PTPN21-205ENST00000554270 WRNQ14191 1432 aaPredicted RBP eCLIP16.89■□□□□ 0.29
PTPN21-205ENST00000554270 MIER1Q8N108 512 aa16.89■□□□□ 0.29
PTPN21-205ENST00000554270 TNIKQ9UKE5 1360 aa16.88■□□□□ 0.29
PTPN21-205ENST00000554270 TOP2AP11388 1531 aaKnown RBP16.84■□□□□ 0.29
PTPN21-205ENST00000554270 CLIP1P30622 1438 aa16.82■□□□□ 0.28
PTPN21-205ENST00000554270 SMARCA4P51532 1647 aa16.82■□□□□ 0.28
PTPN21-205ENST00000554270 GOLGA3Q08378 1498 aa16.79■□□□□ 0.28
PTPN21-205ENST00000554270 SMARCA2P51531 1590 aa16.79■□□□□ 0.28
PTPN21-205ENST00000554270 MYT1Q01538 1121 aa16.78■□□□□ 0.28
PTPN21-205ENST00000554270 P3H3Q8IVL6 736 aa16.77■□□□□ 0.28
PTPN21-205ENST00000554270 BAZ1BQ9UIG0 1483 aaKnown RBP16.69■□□□□ 0.26
PTPN21-205ENST00000554270 EEA1Q15075 1411 aa16.69■□□□□ 0.26
PTPN21-205ENST00000554270 BCANQ96GW7 911 aa16.67■□□□□ 0.26
PTPN21-205ENST00000554270 KANK4Q5T7N3 995 aaPredicted RBP16.66■□□□□ 0.26
PTPN21-205ENST00000554270 FAM50AQ14320 339 aaKnown RBP16.66■□□□□ 0.26
PTPN21-205ENST00000554270 CEP164Q9UPV0 1460 aa16.65■□□□□ 0.26
PTPN21-205ENST00000554270 RAPGEF2Q9Y4G8 1499 aa16.65■□□□□ 0.26
PTPN21-205ENST00000554270 ATAD2BQ9ULI0 1458 aa16.57■□□□□ 0.24
PTPN21-205ENST00000554270 HIRIP3Q9BW71 556 aaPredicted RBP16.55■□□□□ 0.24
PTPN21-205ENST00000554270 VPS8Q8N3P4 1428 aa16.55■□□□□ 0.24
PTPN21-205ENST00000554270 EIF4G1Q04637 1599 aaKnown RBP16.54■□□□□ 0.24
PTPN21-205ENST00000554270 SYNJ1O43426 1573 aa16.54■□□□□ 0.24
PTPN21-205ENST00000554270 UNC13AQ9UPW8 1703 aa16.47■□□□□ 0.23
PTPN21-205ENST00000554270 ARID3CA6NKF2 412 aa16.46■□□□□ 0.23
PTPN21-205ENST00000554270 CNGB1Q14028 1251 aaPredicted RBP16.46■□□□□ 0.23
PTPN21-205ENST00000554270 BICRAQ9NZM4 1560 aa16.45■□□□□ 0.22
PTPN21-205ENST00000554270 DDX10Q13206 875 aaKnown RBP16.44■□□□□ 0.22
PTPN21-205ENST00000554270 SIN3AQ96ST3 1273 aa16.41■□□□□ 0.22
PTPN21-205ENST00000554270 KIF27Q86VH2 1401 aa16.38■□□□□ 0.21
PTPN21-205ENST00000554270 KCNH8Q96L42 1107 aa16.37■□□□□ 0.21
PTPN21-205ENST00000554270 NEFLP07196 543 aa16.37■□□□□ 0.21
PTPN21-205ENST00000554270 KIF21BO75037 1637 aa16.35■□□□□ 0.21
PTPN21-205ENST00000554270 TRIM52Q96A61 297 aa16.35■□□□□ 0.21
PTPN21-205ENST00000554270 DHX57Q6P158 1386 aaKnown RBP16.32■□□□□ 0.2
PTPN21-205ENST00000554270 FKBP8Q14318 412 aa16.32■□□□□ 0.2
PTPN21-205ENST00000554270 CUX2O14529 1486 aa16.31■□□□□ 0.2
PTPN21-205ENST00000554270 SUPT16HQ9Y5B9 1047 aaKnown RBP16.3■□□□□ 0.2
PTPN21-205ENST00000554270 CCNB3Q8WWL7 1395 aa16.3■□□□□ 0.2
PTPN21-205ENST00000554270 ARAP1Q96P48 1450 aa16.27■□□□□ 0.2
PTPN21-205ENST00000554270 CHIC2Q9UKJ5 165 aa16.25■□□□□ 0.19
PTPN21-205ENST00000554270 POLR3GLQ9BT43 218 aa16.24■□□□□ 0.19
PTPN21-205ENST00000554270 CARMIL1Q5VZK9 1371 aa16.24■□□□□ 0.19
PTPN21-205ENST00000554270 RAB3GAP2Q9H2M9 1393 aa16.22■□□□□ 0.19
PTPN21-205ENST00000554270 IRX6P78412 446 aaPredicted RBP16.2■□□□□ 0.18
PTPN21-205ENST00000554270 ANP32CO43423 234 aa16.19■□□□□ 0.18
PTPN21-205ENST00000554270 CUX1P39880 1505 aa16.17■□□□□ 0.18
PTPN21-205ENST00000554270 PRXQ9BXM0 1461 aa16.16■□□□□ 0.18
PTPN21-205ENST00000554270 IGF1RP08069 1367 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms