RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 PELP1Q8IZL8 1130 aaKnown RBP16.75■□□□□ 0.27
SIX4-202ENST00000554079 NISCHQ9Y2I1 1504 aa16.57■□□□□ 0.24
SIX4-202ENST00000554079 HRCP23327 699 aa16.43■□□□□ 0.22
SIX4-202ENST00000554079 MYT1Q01538 1121 aa16.29■□□□□ 0.2
SIX4-202ENST00000554079 PPARGC1BQ86YN6 1023 aaKnown RBP15.96■□□□□ 0.15
SIX4-202ENST00000554079 SCAF1Q9H7N4 1312 aaKnown RBP15.86■□□□□ 0.13
SIX4-202ENST00000554079 MYO15BQ96JP2 1530 aa15.66■□□□□ 0.1
SIX4-202ENST00000554079 PCGF6Q9BYE7 350 aa15.65■□□□□ 0.1
SIX4-202ENST00000554079 TTBK1Q5TCY1 1321 aaPredicted RBP15.52■□□□□ 0.08
SIX4-202ENST00000554079 CCDC180Q9P1Z9 1646 aa15.36■□□□□ 0.05
SIX4-202ENST00000554079 DCAF1Q9Y4B6 1507 aa15.35■□□□□ 0.05
SIX4-202ENST00000554079 ACIN1Q9UKV3 1341 aaKnown RBP15.27■□□□□ 0.04
SIX4-202ENST00000554079 ZEB1P37275 1124 aaPredicted RBP15.18■□□□□ 0.02
SIX4-202ENST00000554079 NEUROD1Q13562 356 aa15.17■□□□□ 0.02
SIX4-202ENST00000554079 BCL11AQ9H165 835 aa15.13■□□□□ 0.01
SIX4-202ENST00000554079 GTF3C3Q9Y5Q9 886 aa15.11■□□□□ 0.01
SIX4-202ENST00000554079 TRIM26Q12899 539 aaPredicted RBP15.08■□□□□ 0
SIX4-202ENST00000554079 CHIC1Q5VXU3 224 aa15.07■□□□□ 0
SIX4-202ENST00000554079 PRKCSHP14314 528 aaPredicted RBP15.03■□□□□ -0
SIX4-202ENST00000554079 FAM9AQ8IZU1 332 aaPredicted RBP15.02□□□□□ -0.01
SIX4-202ENST00000554079 CENPBP07199 599 aaPredicted RBP14.99□□□□□ -0.01
SIX4-202ENST00000554079 SUPT5HO00267 1087 aaKnown RBP14.95□□□□□ -0.02
SIX4-202ENST00000554079 SHROOM4Q9ULL8 1493 aa14.83□□□□□ -0.04
SIX4-202ENST00000554079 ANP32EQ9BTT0 268 aa14.74□□□□□ -0.05
SIX4-202ENST00000554079 LOC105371045A0A1W2PR82 267 aa14.69□□□□□ -0.06
SIX4-202ENST00000554079 ERICH6Q7L0X2 663 aa14.63□□□□□ -0.07
SIX4-202ENST00000554079 DIEXFQ68CQ4 756 aaKnown RBP14.63□□□□□ -0.07
SIX4-202ENST00000554079 APLP2Q06481 763 aa14.61□□□□□ -0.07
SIX4-202ENST00000554079 CSRNP3Q8WYN3 585 aa14.58□□□□□ -0.08
SIX4-202ENST00000554079 TRIM41Q8WV44 630 aa14.44□□□□□ -0.1
SIX4-202ENST00000554079 TSHZ2Q9NRE2 1034 aa14.42□□□□□ -0.1
SIX4-202ENST00000554079 ABCC9O60706 1549 aa14.41□□□□□ -0.1
SIX4-202ENST00000554079 YTHDC1Q96MU7 727 aaKnown RBP14.36□□□□□ -0.11
SIX4-202ENST00000554079 CLSPNQ9HAW4 1339 aa14.33□□□□□ -0.11
SIX4-202ENST00000554079 SUPT16HQ9Y5B9 1047 aaKnown RBP14.31□□□□□ -0.12
SIX4-202ENST00000554079 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.3□□□□□ -0.12
SIX4-202ENST00000554079 CCER1Q8TC90 406 aaPredicted RBP14.27□□□□□ -0.12
SIX4-202ENST00000554079 ZNF316A6NFI3 1004 aaPredicted RBP14.24□□□□□ -0.13
SIX4-202ENST00000554079 MIER1Q8N108 512 aa14.21□□□□□ -0.13
SIX4-202ENST00000554079 ZCCHC6Q5VYS8 1495 aaKnown RBP14.19□□□□□ -0.14
SIX4-202ENST00000554079 ANO8Q9HCE9 1232 aaPredicted RBP14.08□□□□□ -0.16
SIX4-202ENST00000554079 RBM19Q9Y4C8 960 aaKnown RBP13.98□□□□□ -0.17
SIX4-202ENST00000554079 MSH5O43196 834 aa13.97□□□□□ -0.17
SIX4-202ENST00000554079 UBE2Q2Q8WVN8 375 aa13.94□□□□□ -0.18
SIX4-202ENST00000554079 DCAF8L2P0C7V8 631 aa13.93□□□□□ -0.18
SIX4-202ENST00000554079 MYT1LQ9UL68 1186 aa13.9□□□□□ -0.18
SIX4-202ENST00000554079 RB1CC1Q8TDY2 1594 aa13.89□□□□□ -0.19
SIX4-202ENST00000554079 SALL2Q9Y467 1007 aaPredicted RBP13.88□□□□□ -0.19
SIX4-202ENST00000554079 NACADO15069 1562 aa13.87□□□□□ -0.19
SIX4-202ENST00000554079 DEKP35659 375 aaKnown RBP13.85□□□□□ -0.19
SIX4-202ENST00000554079 ERICH6BQ5W0A0 696 aa13.85□□□□□ -0.19
SIX4-202ENST00000554079 FANCIQ9NVI1 1328 aa13.81□□□□□ -0.2
SIX4-202ENST00000554079 BCANQ96GW7 911 aa13.78□□□□□ -0.2
SIX4-202ENST00000554079 WRNQ14191 1432 aaPredicted RBP eCLIP13.76□□□□□ -0.21
SIX4-202ENST00000554079 CCDC136Q96JN2 1154 aa13.75□□□□□ -0.21
SIX4-202ENST00000554079 FKBP8Q14318 412 aa13.71□□□□□ -0.21
SIX4-202ENST00000554079 EHMT2Q96KQ7 1210 aa13.68□□□□□ -0.22
SIX4-202ENST00000554079 EIF5BO60841 1220 aaKnown RBP13.65□□□□□ -0.22
SIX4-202ENST00000554079 SLC24A1O60721 1099 aa13.59□□□□□ -0.23
SIX4-202ENST00000554079 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.59□□□□□ -0.23
SIX4-202ENST00000554079 ITGAEP38570 1179 aa13.58□□□□□ -0.24
SIX4-202ENST00000554079 IL27Q8NEV9 243 aa13.56□□□□□ -0.24
SIX4-202ENST00000554079 PKNOX2Q96KN3 472 aa13.56□□□□□ -0.24
SIX4-202ENST00000554079 NEFLP07196 543 aa13.54□□□□□ -0.24
SIX4-202ENST00000554079 KCNH8Q96L42 1107 aa13.52□□□□□ -0.24
SIX4-202ENST00000554079 UNC13AQ9UPW8 1703 aa13.51□□□□□ -0.25
SIX4-202ENST00000554079 PABPN1Q86U42 306 aaKnown RBP eCLIP13.49□□□□□ -0.25
SIX4-202ENST00000554079 CEP162Q5TB80 1403 aa13.47□□□□□ -0.25
SIX4-202ENST00000554079 RTN4Q9NQC3 1192 aaKnown RBP13.45□□□□□ -0.26
SIX4-202ENST00000554079 CDK11AQ9UQ88 783 aaPredicted RBP13.45□□□□□ -0.26
SIX4-202ENST00000554079 RSF1Q96T23 1441 aaPredicted RBP13.44□□□□□ -0.26
SIX4-202ENST00000554079 NBR1Q14596 966 aa13.43□□□□□ -0.26
SIX4-202ENST00000554079 NOP58Q9Y2X3 529 aaKnown RBP13.43□□□□□ -0.26
SIX4-202ENST00000554079 SCRIBQ14160 1630 aa13.43□□□□□ -0.26
SIX4-202ENST00000554079 DAXXQ9UER7 740 aaPredicted RBP13.42□□□□□ -0.26
SIX4-202ENST00000554079 BICRAQ9NZM4 1560 aa13.41□□□□□ -0.26
SIX4-202ENST00000554079 PAK3O75914 559 aaPredicted RBP13.39□□□□□ -0.27
SIX4-202ENST00000554079 PLEKHG5O94827 1062 aa13.39□□□□□ -0.27
SIX4-202ENST00000554079 HNRNPUL2Q1KMD3 747 aaKnown RBP13.37□□□□□ -0.27
SIX4-202ENST00000554079 DHX57Q6P158 1386 aaKnown RBP13.35□□□□□ -0.27
SIX4-202ENST00000554079 C11orf95C9JLR9 678 aaPredicted RBP13.34□□□□□ -0.27
SIX4-202ENST00000554079 AEBP2Q6ZN18 517 aaPredicted RBP13.34□□□□□ -0.27
SIX4-202ENST00000554079 EIF4G1Q04637 1599 aaKnown RBP13.33□□□□□ -0.27
SIX4-202ENST00000554079 WASHC2AQ641Q2 1341 aa13.33□□□□□ -0.28
SIX4-202ENST00000554079 TNIKQ9UKE5 1360 aa13.33□□□□□ -0.28
SIX4-202ENST00000554079 RTL5Q5HYW3 569 aaPredicted RBP13.31□□□□□ -0.28
SIX4-202ENST00000554079 PODXL2Q9NZ53 605 aa13.31□□□□□ -0.28
SIX4-202ENST00000554079 WASHC2CQ9Y4E1 1318 aa13.27□□□□□ -0.28
SIX4-202ENST00000554079 TRIM52Q96A61 297 aa13.24□□□□□ -0.29
SIX4-202ENST00000554079 CCER2I3L3R5 266 aa13.23□□□□□ -0.29
SIX4-202ENST00000554079 PPP4R2Q9NY27 417 aa13.2□□□□□ -0.3
SIX4-202ENST00000554079 DNAJC5BQ9UF47 199 aa13.2□□□□□ -0.3
SIX4-202ENST00000554079 IPO9Q96P70 1041 aaKnown RBP13.19□□□□□ -0.3
SIX4-202ENST00000554079 ABCC8Q09428 1581 aa13.19□□□□□ -0.3
SIX4-202ENST00000554079 IRX6P78412 446 aaPredicted RBP13.18□□□□□ -0.3
SIX4-202ENST00000554079 RSPH6AQ9H0K4 717 aa13.18□□□□□ -0.3
SIX4-202ENST00000554079 ZMYND15Q9H091 742 aa13.16□□□□□ -0.3
SIX4-202ENST00000554079 BRPF3Q9ULD4 1205 aa13.16□□□□□ -0.3
SIX4-202ENST00000554079 PPP1R15AO75807 674 aaPredicted RBP13.15□□□□□ -0.3
SIX4-202ENST00000554079 EEA1Q15075 1411 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms