RNA–Protein interactions for RNA: ENST00000551219.5

PTPRR-211, Transcript of protein tyrosine phosphatase, receptor type R, humanhuman

TSL 1 (best)

Gene PTPRR, Length 2,966 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRR-211ENST00000551219 NISCHQ9Y2I1 1504 aa13.43□□□□□ -0.26
PTPRR-211ENST00000551219 CHIC1Q5VXU3 224 aa13.04□□□□□ -0.32
PTPRR-211ENST00000551219 AEBP2Q6ZN18 517 aaPredicted RBP12.61□□□□□ -0.39
PTPRR-211ENST00000551219 EHMT2Q96KQ7 1210 aa12.09□□□□□ -0.47
PTPRR-211ENST00000551219 SLC24A1O60721 1099 aa12.02□□□□□ -0.49
PTPRR-211ENST00000551219 PHF23Q9BUL5 403 aaPredicted RBP11.88□□□□□ -0.51
PTPRR-211ENST00000551219 PLPPR3Q6T4P5 718 aa11.58□□□□□ -0.56
PTPRR-211ENST00000551219 CCDC180Q9P1Z9 1646 aa11.42□□□□□ -0.58
PTPRR-211ENST00000551219 ZCCHC6Q5VYS8 1495 aaKnown RBP11.41□□□□□ -0.58
PTPRR-211ENST00000551219 SHROOM4Q9ULL8 1493 aa11.39□□□□□ -0.59
PTPRR-211ENST00000551219 RTN4Q9NQC3 1192 aaKnown RBP11.31□□□□□ -0.6
PTPRR-211ENST00000551219 KCNA4P22459 653 aa11.26□□□□□ -0.61
PTPRR-211ENST00000551219 SUPT5HO00267 1087 aaKnown RBP11.25□□□□□ -0.61
PTPRR-211ENST00000551219 CSRNP3Q8WYN3 585 aa11.2□□□□□ -0.62
PTPRR-211ENST00000551219 DCAF1Q9Y4B6 1507 aa11.11□□□□□ -0.63
PTPRR-211ENST00000551219 HRCP23327 699 aa11.08□□□□□ -0.64
PTPRR-211ENST00000551219 MYO15BQ96JP2 1530 aa11.08□□□□□ -0.64
PTPRR-211ENST00000551219 DCAF8L2P0C7V8 631 aa10.88□□□□□ -0.67
PTPRR-211ENST00000551219 PCGF6Q9BYE7 350 aa10.86□□□□□ -0.67
PTPRR-211ENST00000551219 ABCC9O60706 1549 aa10.81□□□□□ -0.68
PTPRR-211ENST00000551219 AMER1Q5JTC6 1135 aaPredicted RBP10.8□□□□□ -0.68
PTPRR-211ENST00000551219 ADRA2BP18089 450 aa10.79□□□□□ -0.68
PTPRR-211ENST00000551219 PRKCSHP14314 528 aaPredicted RBP10.76□□□□□ -0.69
PTPRR-211ENST00000551219 TRIM26Q12899 539 aaPredicted RBP10.73□□□□□ -0.69
PTPRR-211ENST00000551219 SLC4A1APQ9BWU0 796 aaKnown RBP10.72□□□□□ -0.69
PTPRR-211ENST00000551219 LOC105371045A0A1W2PR82 267 aa10.68□□□□□ -0.7
PTPRR-211ENST00000551219 PPARGC1BQ86YN6 1023 aaKnown RBP10.68□□□□□ -0.7
PTPRR-211ENST00000551219 RSF1Q96T23 1441 aaPredicted RBP10.66□□□□□ -0.7
PTPRR-211ENST00000551219 ZEB1P37275 1124 aaPredicted RBP10.65□□□□□ -0.7
PTPRR-211ENST00000551219 NCBP3Q53F19 620 aaKnown RBP10.64□□□□□ -0.71
PTPRR-211ENST00000551219 RB1CC1Q8TDY2 1594 aa10.62□□□□□ -0.71
PTPRR-211ENST00000551219 SCRIBQ14160 1630 aa10.6□□□□□ -0.71
PTPRR-211ENST00000551219 TRIM41Q8WV44 630 aa10.55□□□□□ -0.72
PTPRR-211ENST00000551219 NACADO15069 1562 aa10.5□□□□□ -0.73
PTPRR-211ENST00000551219 ZBTB22O15209 634 aa10.48□□□□□ -0.73
PTPRR-211ENST00000551219 PELP1Q8IZL8 1130 aaKnown RBP10.44□□□□□ -0.74
PTPRR-211ENST00000551219 DAXXQ9UER7 740 aaPredicted RBP10.43□□□□□ -0.74
PTPRR-211ENST00000551219 MROH2BQ7Z745 1585 aa10.39□□□□□ -0.75
PTPRR-211ENST00000551219 BAZ1AQ9NRL2 1556 aaPredicted RBP10.38□□□□□ -0.75
PTPRR-211ENST00000551219 CECR2Q9BXF3 1484 aa10.38□□□□□ -0.75
PTPRR-211ENST00000551219 FAM9AQ8IZU1 332 aaPredicted RBP10.36□□□□□ -0.75
PTPRR-211ENST00000551219 EIF4G1Q04637 1599 aaKnown RBP10.36□□□□□ -0.75
PTPRR-211ENST00000551219 WIZO95785 1651 aa10.33□□□□□ -0.76
PTPRR-211ENST00000551219 TIMELESSQ9UNS1 1208 aa10.29□□□□□ -0.76
PTPRR-211ENST00000551219 WRNQ14191 1432 aaPredicted RBP eCLIP10.28□□□□□ -0.76
PTPRR-211ENST00000551219 TOP2AP11388 1531 aaKnown RBP10.27□□□□□ -0.77
PTPRR-211ENST00000551219 PPP6R1Q9UPN7 881 aa10.25□□□□□ -0.77
PTPRR-211ENST00000551219 SCAF1Q9H7N4 1312 aaKnown RBP10.25□□□□□ -0.77
PTPRR-211ENST00000551219 TAOK2Q9UL54 1235 aa10.25□□□□□ -0.77
PTPRR-211ENST00000551219 EEA1Q15075 1411 aa10.22□□□□□ -0.77
PTPRR-211ENST00000551219 CCER1Q8TC90 406 aaPredicted RBP10.2□□□□□ -0.78
PTPRR-211ENST00000551219 SMARCA4P51532 1647 aa10.19□□□□□ -0.78
PTPRR-211ENST00000551219 TNIKQ9UKE5 1360 aa10.18□□□□□ -0.78
PTPRR-211ENST00000551219 SMARCA2P51531 1590 aa10.18□□□□□ -0.78
PTPRR-211ENST00000551219 TULP1O00294 542 aaPredicted RBP10.17□□□□□ -0.78
PTPRR-211ENST00000551219 TPRNQ4KMQ1 711 aa10.17□□□□□ -0.78
PTPRR-211ENST00000551219 CEP162Q5TB80 1403 aa10.17□□□□□ -0.78
PTPRR-211ENST00000551219 CCDC88BA6NC98 1476 aa10.17□□□□□ -0.78
PTPRR-211ENST00000551219 ACIN1Q9UKV3 1341 aaKnown RBP10.16□□□□□ -0.78
PTPRR-211ENST00000551219 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.15□□□□□ -0.78
PTPRR-211ENST00000551219 ABCC8Q09428 1581 aa10.14□□□□□ -0.79
PTPRR-211ENST00000551219 NPM3O75607 178 aaKnown RBP10.13□□□□□ -0.79
PTPRR-211ENST00000551219 CENPBP07199 599 aaPredicted RBP10.13□□□□□ -0.79
PTPRR-211ENST00000551219 DIEXFQ68CQ4 756 aaKnown RBP10.11□□□□□ -0.79
PTPRR-211ENST00000551219 GOLGA3Q08378 1498 aa10.1□□□□□ -0.79
PTPRR-211ENST00000551219 SOGA1O94964 1423 aa10.08□□□□□ -0.8
PTPRR-211ENST00000551219 SENP3Q9H4L4 574 aaPredicted RBP10.08□□□□□ -0.8
PTPRR-211ENST00000551219 HAP1P54257 671 aaPredicted RBP10.08□□□□□ -0.8
PTPRR-211ENST00000551219 PLCB2Q00722 1185 aa10.08□□□□□ -0.8
PTPRR-211ENST00000551219 FKBP8Q14318 412 aa10.07□□□□□ -0.8
PTPRR-211ENST00000551219 NEUROD1Q13562 356 aa10.06□□□□□ -0.8
PTPRR-211ENST00000551219 BCANQ96GW7 911 aa10.05□□□□□ -0.8
PTPRR-211ENST00000551219 PEG3Q9GZU2 1588 aa10.04□□□□□ -0.8
PTPRR-211ENST00000551219 KIF21BO75037 1637 aa10.04□□□□□ -0.8
PTPRR-211ENST00000551219 UNC13AQ9UPW8 1703 aa10.04□□□□□ -0.8
PTPRR-211ENST00000551219 CEP164Q9UPV0 1460 aa10.04□□□□□ -0.8
PTPRR-211ENST00000551219 ZNF316A6NFI3 1004 aaPredicted RBP10.02□□□□□ -0.81
PTPRR-211ENST00000551219 MYT1Q01538 1121 aa10.02□□□□□ -0.81
PTPRR-211ENST00000551219 UBTFP17480 764 aaKnown RBP10□□□□□ -0.81
PTPRR-211ENST00000551219 RUSC2Q8N2Y8 1516 aa10□□□□□ -0.81
PTPRR-211ENST00000551219 BAZ1BQ9UIG0 1483 aaKnown RBP10□□□□□ -0.81
PTPRR-211ENST00000551219 GTF3C3Q9Y5Q9 886 aa9.99□□□□□ -0.81
PTPRR-211ENST00000551219 PPP4R3CPQ6ZMV5 832 aa9.99□□□□□ -0.81
PTPRR-211ENST00000551219 ARXQ96QS3 562 aa9.96□□□□□ -0.82
PTPRR-211ENST00000551219 VPS8Q8N3P4 1428 aa9.96□□□□□ -0.82
PTPRR-211ENST00000551219 CLIP1P30622 1438 aa9.95□□□□□ -0.82
PTPRR-211ENST00000551219 SYNJ1O43426 1573 aa9.94□□□□□ -0.82
PTPRR-211ENST00000551219 TTBK1Q5TCY1 1321 aaPredicted RBP9.93□□□□□ -0.82
PTPRR-211ENST00000551219 BICRAQ9NZM4 1560 aa9.93□□□□□ -0.82
PTPRR-211ENST00000551219 CLSPNQ9HAW4 1339 aa9.9□□□□□ -0.83
PTPRR-211ENST00000551219 APLP2Q06481 763 aa9.88□□□□□ -0.83
PTPRR-211ENST00000551219 ATAD2BQ9ULI0 1458 aa9.88□□□□□ -0.83
PTPRR-211ENST00000551219 ERICH3Q5RHP9 1530 aa9.86□□□□□ -0.83
PTPRR-211ENST00000551219 TOP2BQ02880 1626 aa9.86□□□□□ -0.83
PTPRR-211ENST00000551219 RAPGEF2Q9Y4G8 1499 aa9.85□□□□□ -0.83
PTPRR-211ENST00000551219 HNRNPUL2Q1KMD3 747 aaKnown RBP9.84□□□□□ -0.83
PTPRR-211ENST00000551219 BIVM-ERCC5R4GMW8 1640 aa9.84□□□□□ -0.83
PTPRR-211ENST00000551219 MIER1Q8N108 512 aa9.83□□□□□ -0.84
PTPRR-211ENST00000551219 PRXQ9BXM0 1461 aa9.8□□□□□ -0.84
PTPRR-211ENST00000551219 PABPN1Q86U42 306 aaKnown RBP eCLIP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms