RNA–Protein interactions for RNA: ENST00000549396.5

PPFIA2-216, Transcript of PTPRF interacting protein alpha 2, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PPFIA2, Length 5,363 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA2-216ENST00000549396 NISCHQ9Y2I1 1504 aa16.79■□□□□ 0.28
PPFIA2-216ENST00000549396 DCAF8L2P0C7V8 631 aa16.06■□□□□ 0.16
PPFIA2-216ENST00000549396 SUPT5HO00267 1087 aaKnown RBP15.06■□□□□ 0
PPFIA2-216ENST00000549396 SHROOM4Q9ULL8 1493 aa14.93□□□□□ -0.02
PPFIA2-216ENST00000549396 FAM9AQ8IZU1 332 aaPredicted RBP14.92□□□□□ -0.02
PPFIA2-216ENST00000549396 APLP2Q06481 763 aa14.65□□□□□ -0.06
PPFIA2-216ENST00000549396 CCDC180Q9P1Z9 1646 aa14.35□□□□□ -0.11
PPFIA2-216ENST00000549396 TRIM41Q8WV44 630 aa14.31□□□□□ -0.12
PPFIA2-216ENST00000549396 ABCC9O60706 1549 aa14.18□□□□□ -0.14
PPFIA2-216ENST00000549396 PELP1Q8IZL8 1130 aaKnown RBP14.14□□□□□ -0.15
PPFIA2-216ENST00000549396 ZEB1P37275 1124 aaPredicted RBP14.11□□□□□ -0.15
PPFIA2-216ENST00000549396 UBTFP17480 764 aaKnown RBP14.04□□□□□ -0.16
PPFIA2-216ENST00000549396 EHMT2Q96KQ7 1210 aa13.98□□□□□ -0.17
PPFIA2-216ENST00000549396 ZCCHC6Q5VYS8 1495 aaKnown RBP13.96□□□□□ -0.18
PPFIA2-216ENST00000549396 RB1CC1Q8TDY2 1594 aa13.88□□□□□ -0.19
PPFIA2-216ENST00000549396 ATP1B4Q9UN42 357 aaPredicted RBP13.85□□□□□ -0.19
PPFIA2-216ENST00000549396 NACADO15069 1562 aa13.82□□□□□ -0.2
PPFIA2-216ENST00000549396 PABPN1Q86U42 306 aaKnown RBP eCLIP13.73□□□□□ -0.21
PPFIA2-216ENST00000549396 DCAF1Q9Y4B6 1507 aa13.71□□□□□ -0.21
PPFIA2-216ENST00000549396 RANGAP1P46060 587 aaPredicted RBP13.7□□□□□ -0.22
PPFIA2-216ENST00000549396 CCER1Q8TC90 406 aaPredicted RBP13.69□□□□□ -0.22
PPFIA2-216ENST00000549396 SCRIBQ14160 1630 aa13.68□□□□□ -0.22
PPFIA2-216ENST00000549396 CHIC1Q5VXU3 224 aa13.64□□□□□ -0.23
PPFIA2-216ENST00000549396 PCGF6Q9BYE7 350 aa13.64□□□□□ -0.23
PPFIA2-216ENST00000549396 TRIM26Q12899 539 aaPredicted RBP13.62□□□□□ -0.23
PPFIA2-216ENST00000549396 CENPBP07199 599 aaPredicted RBP13.6□□□□□ -0.23
PPFIA2-216ENST00000549396 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.59□□□□□ -0.23
PPFIA2-216ENST00000549396 HNRNPUL2Q1KMD3 747 aaKnown RBP13.59□□□□□ -0.23
PPFIA2-216ENST00000549396 TTBK1Q5TCY1 1321 aaPredicted RBP13.54□□□□□ -0.24
PPFIA2-216ENST00000549396 MYT1LQ9UL68 1186 aa13.49□□□□□ -0.25
PPFIA2-216ENST00000549396 MYO15BQ96JP2 1530 aa13.48□□□□□ -0.25
PPFIA2-216ENST00000549396 CDK11AQ9UQ88 783 aaPredicted RBP13.39□□□□□ -0.27
PPFIA2-216ENST00000549396 NEFLP07196 543 aa13.36□□□□□ -0.27
PPFIA2-216ENST00000549396 EEA1Q15075 1411 aa13.35□□□□□ -0.27
PPFIA2-216ENST00000549396 CSRNP3Q8WYN3 585 aa13.35□□□□□ -0.27
PPFIA2-216ENST00000549396 BAZ1AQ9NRL2 1556 aaPredicted RBP13.34□□□□□ -0.27
PPFIA2-216ENST00000549396 ACIN1Q9UKV3 1341 aaKnown RBP13.33□□□□□ -0.28
PPFIA2-216ENST00000549396 BAZ1BQ9UIG0 1483 aaKnown RBP13.28□□□□□ -0.28
PPFIA2-216ENST00000549396 MYT1Q01538 1121 aa13.24□□□□□ -0.29
PPFIA2-216ENST00000549396 FBLN2P98095 1184 aa13.21□□□□□ -0.29
PPFIA2-216ENST00000549396 ITGAEP38570 1179 aa13.21□□□□□ -0.3
PPFIA2-216ENST00000549396 FAM50AQ14320 339 aaKnown RBP13.2□□□□□ -0.3
PPFIA2-216ENST00000549396 LOC105371045A0A1W2PR82 267 aa13.19□□□□□ -0.3
PPFIA2-216ENST00000549396 NPM1P06748 294 aaKnown RBP eCLIP13.18□□□□□ -0.3
PPFIA2-216ENST00000549396 SMARCA2P51531 1590 aa13.18□□□□□ -0.3
PPFIA2-216ENST00000549396 RSF1Q96T23 1441 aaPredicted RBP13.17□□□□□ -0.3
PPFIA2-216ENST00000549396 ERICH6Q7L0X2 663 aa13.14□□□□□ -0.31
PPFIA2-216ENST00000549396 TRIM52Q96A61 297 aa13.13□□□□□ -0.31
PPFIA2-216ENST00000549396 HRCP23327 699 aa13.1□□□□□ -0.31
PPFIA2-216ENST00000549396 PPARGC1BQ86YN6 1023 aaKnown RBP13.07□□□□□ -0.32
PPFIA2-216ENST00000549396 KIF27Q86VH2 1401 aa13.06□□□□□ -0.32
PPFIA2-216ENST00000549396 WRNQ14191 1432 aaPredicted RBP eCLIP13.05□□□□□ -0.32
PPFIA2-216ENST00000549396 GOLGA3Q08378 1498 aa13.05□□□□□ -0.32
PPFIA2-216ENST00000549396 CHMP7Q8WUX9 453 aaPredicted RBP13.03□□□□□ -0.32
PPFIA2-216ENST00000549396 ESF1Q9H501 851 aaKnown RBP13.01□□□□□ -0.33
PPFIA2-216ENST00000549396 ERCC6Q03468 1493 aa13□□□□□ -0.33
PPFIA2-216ENST00000549396 CEP164Q9UPV0 1460 aa12.99□□□□□ -0.33
PPFIA2-216ENST00000549396 PDS5BQ9NTI5 1447 aa12.98□□□□□ -0.33
PPFIA2-216ENST00000549396 POLR3GLQ9BT43 218 aa12.97□□□□□ -0.33
PPFIA2-216ENST00000549396 CLIP1P30622 1438 aa12.93□□□□□ -0.34
PPFIA2-216ENST00000549396 MTUS2Q5JR59 1369 aa12.91□□□□□ -0.34
PPFIA2-216ENST00000549396 TOP2AP11388 1531 aaKnown RBP12.91□□□□□ -0.34
PPFIA2-216ENST00000549396 SLC4A1APQ9BWU0 796 aaKnown RBP12.9□□□□□ -0.34
PPFIA2-216ENST00000549396 NEFMP07197 916 aa12.89□□□□□ -0.35
PPFIA2-216ENST00000549396 TSPY4P0CV99 314 aa12.88□□□□□ -0.35
PPFIA2-216ENST00000549396 TSPY10P0CW01 314 aa12.88□□□□□ -0.35
PPFIA2-216ENST00000549396 P3H3Q8IVL6 736 aa12.88□□□□□ -0.35
PPFIA2-216ENST00000549396 TNIKQ9UKE5 1360 aa12.87□□□□□ -0.35
PPFIA2-216ENST00000549396 ABCC8Q09428 1581 aa12.87□□□□□ -0.35
PPFIA2-216ENST00000549396 DAXXQ9UER7 740 aaPredicted RBP12.87□□□□□ -0.35
PPFIA2-216ENST00000549396 FHAD1B1AJZ9 1412 aa12.87□□□□□ -0.35
PPFIA2-216ENST00000549396 ANP32CO43423 234 aa12.86□□□□□ -0.35
PPFIA2-216ENST00000549396 ZNF777Q9ULD5 760 aaPredicted RBP12.85□□□□□ -0.35
PPFIA2-216ENST00000549396 PLEKHD1A6NEE1 506 aa12.84□□□□□ -0.35
PPFIA2-216ENST00000549396 TONSLQ96HA7 1378 aa12.81□□□□□ -0.36
PPFIA2-216ENST00000549396 NEUROD1Q13562 356 aa12.81□□□□□ -0.36
PPFIA2-216ENST00000549396 YTHDC1Q96MU7 727 aaKnown RBP12.81□□□□□ -0.36
PPFIA2-216ENST00000549396 CECR2Q9BXF3 1484 aa12.8□□□□□ -0.36
PPFIA2-216ENST00000549396 DIEXFQ68CQ4 756 aaKnown RBP12.79□□□□□ -0.36
PPFIA2-216ENST00000549396 STAG3Q9UJ98 1225 aa12.77□□□□□ -0.36
PPFIA2-216ENST00000549396 MROH2BQ7Z745 1585 aa12.77□□□□□ -0.37
PPFIA2-216ENST00000549396 CARMIL2Q6F5E8 1435 aa12.76□□□□□ -0.37
PPFIA2-216ENST00000549396 SMARCA4P51532 1647 aa12.76□□□□□ -0.37
PPFIA2-216ENST00000549396 BCANQ96GW7 911 aa12.76□□□□□ -0.37
PPFIA2-216ENST00000549396 CEP162Q5TB80 1403 aa12.76□□□□□ -0.37
PPFIA2-216ENST00000549396 CLSPNQ9HAW4 1339 aa12.75□□□□□ -0.37
PPFIA2-216ENST00000549396 CCDC88BA6NC98 1476 aa12.75□□□□□ -0.37
PPFIA2-216ENST00000549396 ZNF316A6NFI3 1004 aaPredicted RBP12.75□□□□□ -0.37
PPFIA2-216ENST00000549396 CADPSQ9ULU8 1353 aa12.74□□□□□ -0.37
PPFIA2-216ENST00000549396 CARMIL1Q5VZK9 1371 aa12.72□□□□□ -0.37
PPFIA2-216ENST00000549396 CUX2O14529 1486 aa12.72□□□□□ -0.37
PPFIA2-216ENST00000549396 ATAD2BQ9ULI0 1458 aa12.72□□□□□ -0.37
PPFIA2-216ENST00000549396 ZNF326Q5BKZ1 582 aaKnown RBP12.72□□□□□ -0.37
PPFIA2-216ENST00000549396 ZBTB47Q9UFB7 747 aaPredicted RBP12.72□□□□□ -0.37
PPFIA2-216ENST00000549396 SLC24A1O60721 1099 aa12.7□□□□□ -0.38
PPFIA2-216ENST00000549396 ARID3CA6NKF2 412 aa12.67□□□□□ -0.38
PPFIA2-216ENST00000549396 SOGA1O94964 1423 aa12.66□□□□□ -0.38
PPFIA2-216ENST00000549396 FMN1Q68DA7 1419 aa12.65□□□□□ -0.38
PPFIA2-216ENST00000549396 CDCA8Q53HL2 280 aa12.62□□□□□ -0.39
PPFIA2-216ENST00000549396 CFDP1Q9UEE9 299 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms