RNA–Protein interactions for RNA: ENST00000539338.6

CACNB1-206, Transcript of calcium voltage-gated channel auxiliary subunit beta 1, humanhuman

TSL 1 (best)

Gene CACNB1, Length 5,308 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNB1-206ENST00000539338 DCAF8L2P0C7V8 631 aa25.63■■□□□ 1.69
CACNB1-206ENST00000539338 NISCHQ9Y2I1 1504 aa24.71■■□□□ 1.55
CACNB1-206ENST00000539338 SUPT5HO00267 1087 aaKnown RBP24.21■■□□□ 1.47
CACNB1-206ENST00000539338 SHROOM4Q9ULL8 1493 aa23.85■■□□□ 1.41
CACNB1-206ENST00000539338 FAM9AQ8IZU1 332 aaPredicted RBP23.46■■□□□ 1.35
CACNB1-206ENST00000539338 EHMT2Q96KQ7 1210 aa23.42■■□□□ 1.34
CACNB1-206ENST00000539338 PCGF6Q9BYE7 350 aa22.78■■□□□ 1.24
CACNB1-206ENST00000539338 APLP2Q06481 763 aa22.66■■□□□ 1.22
CACNB1-206ENST00000539338 TTBK1Q5TCY1 1321 aaPredicted RBP22.65■■□□□ 1.22
CACNB1-206ENST00000539338 PELP1Q8IZL8 1130 aaKnown RBP22.52■■□□□ 1.2
CACNB1-206ENST00000539338 TRIM41Q8WV44 630 aa22.34■■□□□ 1.17
CACNB1-206ENST00000539338 ABCC9O60706 1549 aa22.3■■□□□ 1.16
CACNB1-206ENST00000539338 RANGAP1P46060 587 aaPredicted RBP22.29■■□□□ 1.16
CACNB1-206ENST00000539338 CCER1Q8TC90 406 aaPredicted RBP22.19■■□□□ 1.14
CACNB1-206ENST00000539338 ZEB1P37275 1124 aaPredicted RBP22.16■■□□□ 1.14
CACNB1-206ENST00000539338 CENPBP07199 599 aaPredicted RBP22.06■■□□□ 1.12
CACNB1-206ENST00000539338 UBTFP17480 764 aaKnown RBP22■■□□□ 1.11
CACNB1-206ENST00000539338 PPARGC1BQ86YN6 1023 aaKnown RBP21.94■■□□□ 1.1
CACNB1-206ENST00000539338 ATP1B4Q9UN42 357 aaPredicted RBP21.94■■□□□ 1.1
CACNB1-206ENST00000539338 PABPN1Q86U42 306 aaKnown RBP eCLIP21.86■■□□□ 1.09
CACNB1-206ENST00000539338 YTHDC1Q96MU7 727 aaKnown RBP21.79■■□□□ 1.08
CACNB1-206ENST00000539338 MYT1LQ9UL68 1186 aa21.79■■□□□ 1.08
CACNB1-206ENST00000539338 TRIM26Q12899 539 aaPredicted RBP21.74■■□□□ 1.07
CACNB1-206ENST00000539338 LOC105371045A0A1W2PR82 267 aa21.69■■□□□ 1.06
CACNB1-206ENST00000539338 HRCP23327 699 aa21.67■■□□□ 1.06
CACNB1-206ENST00000539338 ERICH6Q7L0X2 663 aa21.67■■□□□ 1.06
CACNB1-206ENST00000539338 CHIC1Q5VXU3 224 aa21.64■■□□□ 1.05
CACNB1-206ENST00000539338 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.54■■□□□ 1.04
CACNB1-206ENST00000539338 HNRNPUL2Q1KMD3 747 aaKnown RBP21.54■■□□□ 1.04
CACNB1-206ENST00000539338 NEFLP07196 543 aa21.49■■□□□ 1.03
CACNB1-206ENST00000539338 ITGAEP38570 1179 aa21.38■■□□□ 1.01
CACNB1-206ENST00000539338 FBLN2P98095 1184 aa21.35■■□□□ 1.01
CACNB1-206ENST00000539338 NPM1P06748 294 aaKnown RBP eCLIP21.16■□□□□ 0.98
CACNB1-206ENST00000539338 POLR3GLQ9BT43 218 aa21.09■□□□□ 0.97
CACNB1-206ENST00000539338 MYT1Q01538 1121 aa21.07■□□□□ 0.96
CACNB1-206ENST00000539338 DIEXFQ68CQ4 756 aaKnown RBP21■□□□□ 0.95
CACNB1-206ENST00000539338 CNGB1Q14028 1251 aaPredicted RBP21■□□□□ 0.95
CACNB1-206ENST00000539338 ESF1Q9H501 851 aaKnown RBP20.94■□□□□ 0.94
CACNB1-206ENST00000539338 RB1CC1Q8TDY2 1594 aa20.87■□□□□ 0.93
CACNB1-206ENST00000539338 FAM50AQ14320 339 aaKnown RBP20.79■□□□□ 0.92
CACNB1-206ENST00000539338 DAXXQ9UER7 740 aaPredicted RBP20.74■□□□□ 0.91
CACNB1-206ENST00000539338 ERCC6Q03468 1493 aa20.7■□□□□ 0.9
CACNB1-206ENST00000539338 NEUROD1Q13562 356 aa20.69■□□□□ 0.9
CACNB1-206ENST00000539338 ZCCHC6Q5VYS8 1495 aaKnown RBP20.67■□□□□ 0.9
CACNB1-206ENST00000539338 GTF3C3Q9Y5Q9 886 aa20.64■□□□□ 0.9
CACNB1-206ENST00000539338 SCRIBQ14160 1630 aa20.64■□□□□ 0.89
CACNB1-206ENST00000539338 TRIM52Q96A61 297 aa20.61■□□□□ 0.89
CACNB1-206ENST00000539338 TRHP20396 242 aaPredicted RBP20.61■□□□□ 0.89
CACNB1-206ENST00000539338 CCDC180Q9P1Z9 1646 aa20.6■□□□□ 0.89
CACNB1-206ENST00000539338 BCANQ96GW7 911 aa20.57■□□□□ 0.88
CACNB1-206ENST00000539338 SLC4A1APQ9BWU0 796 aaKnown RBP20.53■□□□□ 0.88
CACNB1-206ENST00000539338 CHMP7Q8WUX9 453 aaPredicted RBP20.52■□□□□ 0.88
CACNB1-206ENST00000539338 ZNF316A6NFI3 1004 aaPredicted RBP20.5■□□□□ 0.87
CACNB1-206ENST00000539338 CDK11AQ9UQ88 783 aaPredicted RBP20.47■□□□□ 0.87
CACNB1-206ENST00000539338 CSRNP3Q8WYN3 585 aa20.42■□□□□ 0.86
CACNB1-206ENST00000539338 ANP32CO43423 234 aa20.41■□□□□ 0.86
CACNB1-206ENST00000539338 ZNF326Q5BKZ1 582 aaKnown RBP20.41■□□□□ 0.86
CACNB1-206ENST00000539338 PLPPR3Q6T4P5 718 aa20.41■□□□□ 0.86
CACNB1-206ENST00000539338 NACADO15069 1562 aa20.41■□□□□ 0.86
CACNB1-206ENST00000539338 AEBP2Q6ZN18 517 aaPredicted RBP20.4■□□□□ 0.86
CACNB1-206ENST00000539338 CLSPNQ9HAW4 1339 aa20.39■□□□□ 0.85
CACNB1-206ENST00000539338 RTL5Q5HYW3 569 aaPredicted RBP20.37■□□□□ 0.85
CACNB1-206ENST00000539338 P3H3Q8IVL6 736 aa20.36■□□□□ 0.85
CACNB1-206ENST00000539338 ACIN1Q9UKV3 1341 aaKnown RBP20.35■□□□□ 0.85
CACNB1-206ENST00000539338 STAG3Q9UJ98 1225 aa20.29■□□□□ 0.84
CACNB1-206ENST00000539338 ARID3CA6NKF2 412 aa20.27■□□□□ 0.83
CACNB1-206ENST00000539338 DCAF1Q9Y4B6 1507 aa20.19■□□□□ 0.82
CACNB1-206ENST00000539338 ARID4BQ4LE39 1312 aaPredicted RBP20.16■□□□□ 0.82
CACNB1-206ENST00000539338 ZNF777Q9ULD5 760 aaPredicted RBP20.05■□□□□ 0.8
CACNB1-206ENST00000539338 BAZ1BQ9UIG0 1483 aaKnown RBP19.98■□□□□ 0.79
CACNB1-206ENST00000539338 FKBP8Q14318 412 aa19.98■□□□□ 0.79
CACNB1-206ENST00000539338 DDX10Q13206 875 aaKnown RBP19.97■□□□□ 0.79
CACNB1-206ENST00000539338 MYO15BQ96JP2 1530 aa19.97■□□□□ 0.79
CACNB1-206ENST00000539338 TONSLQ96HA7 1378 aa19.95■□□□□ 0.78
CACNB1-206ENST00000539338 CANXP27824 592 aaKnown RBP19.95■□□□□ 0.78
CACNB1-206ENST00000539338 BCL11AQ9H165 835 aa19.93■□□□□ 0.78
CACNB1-206ENST00000539338 PDS5BQ9NTI5 1447 aa19.93■□□□□ 0.78
CACNB1-206ENST00000539338 CECR2Q9BXF3 1484 aa19.9■□□□□ 0.78
CACNB1-206ENST00000539338 HNRNPUQ00839 825 aaKnown RBP eCLIP19.88■□□□□ 0.77
CACNB1-206ENST00000539338 NPM2Q86SE8 214 aaKnown RBP19.86■□□□□ 0.77
CACNB1-206ENST00000539338 ZBTB47Q9UFB7 747 aaPredicted RBP19.86■□□□□ 0.77
CACNB1-206ENST00000539338 C14orf37Q86TY3 774 aa19.85■□□□□ 0.77
CACNB1-206ENST00000539338 CHGAP10645 457 aaKnown RBP19.85■□□□□ 0.77
CACNB1-206ENST00000539338 ANP32AP39687 249 aaKnown RBP19.84■□□□□ 0.77
CACNB1-206ENST00000539338 FAM9BQ8IZU0 186 aa19.84■□□□□ 0.77
CACNB1-206ENST00000539338 CHIC2Q9UKJ5 165 aa19.83■□□□□ 0.76
CACNB1-206ENST00000539338 KCNH8Q96L42 1107 aa19.82■□□□□ 0.76
CACNB1-206ENST00000539338 SCAF1Q9H7N4 1312 aaKnown RBP19.82■□□□□ 0.76
CACNB1-206ENST00000539338 MIER1Q8N108 512 aa19.81■□□□□ 0.76
CACNB1-206ENST00000539338 SLC24A1O60721 1099 aa19.78■□□□□ 0.76
CACNB1-206ENST00000539338 PLEKHD1A6NEE1 506 aa19.76■□□□□ 0.75
CACNB1-206ENST00000539338 HIRIP3Q9BW71 556 aaPredicted RBP19.75■□□□□ 0.75
CACNB1-206ENST00000539338 SALL2Q9Y467 1007 aaPredicted RBP19.74■□□□□ 0.75
CACNB1-206ENST00000539338 CLIP1P30622 1438 aa19.74■□□□□ 0.75
CACNB1-206ENST00000539338 PPP1R15AO75807 674 aaPredicted RBP19.74■□□□□ 0.75
CACNB1-206ENST00000539338 OSCARQ8IYS5 282 aa19.74■□□□□ 0.75
CACNB1-206ENST00000539338 NEFMP07197 916 aa19.73■□□□□ 0.75
CACNB1-206ENST00000539338 TSPY4P0CV99 314 aa19.72■□□□□ 0.75
CACNB1-206ENST00000539338 TSPY10P0CW01 314 aa19.72■□□□□ 0.75
CACNB1-206ENST00000539338 RSF1Q96T23 1441 aaPredicted RBP19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms