RNA–Protein interactions for RNA: ENST00000538494.1

SP140-212, Transcript of SP140 nuclear body protein, humanhuman

TSL 3

Gene SP140, Length 629 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-212ENST00000538494 AEBP2Q6ZN18 517 aaPredicted RBP23.15■■□□□ 1.3
SP140-212ENST00000538494 CHIC1Q5VXU3 224 aa21.68■■□□□ 1.06
SP140-212ENST00000538494 SENP3Q9H4L4 574 aaPredicted RBP19.78■□□□□ 0.76
SP140-212ENST00000538494 PHF23Q9BUL5 403 aaPredicted RBP19.52■□□□□ 0.72
SP140-212ENST00000538494 FOXD1Q16676 465 aa18.49■□□□□ 0.55
SP140-212ENST00000538494 POTEDQ86YR6 584 aa17.53■□□□□ 0.4
SP140-212ENST00000538494 MSH5O43196 834 aa17.4■□□□□ 0.38
SP140-212ENST00000538494 PIAS4Q8N2W9 510 aaPredicted RBP17.23■□□□□ 0.35
SP140-212ENST00000538494 PLPPR3Q6T4P5 718 aa17.19■□□□□ 0.34
SP140-212ENST00000538494 PPP6R1Q9UPN7 881 aa17.08■□□□□ 0.32
SP140-212ENST00000538494 ADRA2BP18089 450 aa17.03■□□□□ 0.32
SP140-212ENST00000538494 MAPK8IP2Q13387 824 aaPredicted RBP15.74■□□□□ 0.11
SP140-212ENST00000538494 DMRT2Q9Y5R5 561 aa15.63■□□□□ 0.09
SP140-212ENST00000538494 SCAF1Q9H7N4 1312 aaKnown RBP15.56■□□□□ 0.08
SP140-212ENST00000538494 CACNB1Q02641 598 aaPredicted RBP15.18■□□□□ 0.02
SP140-212ENST00000538494 DCAF8L1A6NGE4 600 aa15.11■□□□□ 0.01
SP140-212ENST00000538494 PPP4R3CPQ6ZMV5 832 aa15.05■□□□□ -0
SP140-212ENST00000538494 HOXD11P31277 338 aaPredicted RBP14.93□□□□□ -0.02
SP140-212ENST00000538494 CNKSR2Q8WXI2 1034 aa14.82□□□□□ -0.04
SP140-212ENST00000538494 RNF39Q9H2S5 420 aa14.82□□□□□ -0.04
SP140-212ENST00000538494 RNF216Q9NWF9 866 aaPredicted RBP14.75□□□□□ -0.05
SP140-212ENST00000538494 C1QBPQ07021 282 aaKnown RBP14.59□□□□□ -0.07
SP140-212ENST00000538494 NISCHQ9Y2I1 1504 aa14.46□□□□□ -0.1
SP140-212ENST00000538494 DNAJC5BQ9UF47 199 aa14.43□□□□□ -0.1
SP140-212ENST00000538494 NCBP3Q53F19 620 aaKnown RBP14.37□□□□□ -0.11
SP140-212ENST00000538494 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.29□□□□□ -0.12
SP140-212ENST00000538494 NPM3O75607 178 aaKnown RBP14.16□□□□□ -0.14
SP140-212ENST00000538494 U3KPZ7 1027 aaPredicted RBP13.92□□□□□ -0.18
SP140-212ENST00000538494 CAPN15O75808 1086 aa13.85□□□□□ -0.19
SP140-212ENST00000538494 SPINK5Q9NQ38 1064 aaPredicted RBP13.84□□□□□ -0.19
SP140-212ENST00000538494 DSG3P32926 999 aa13.79□□□□□ -0.2
SP140-212ENST00000538494 ABCC9O60706 1549 aa13.79□□□□□ -0.2
SP140-212ENST00000538494 POTEHQ6S545 545 aa13.68□□□□□ -0.22
SP140-212ENST00000538494 KCNA4P22459 653 aa13.64□□□□□ -0.23
SP140-212ENST00000538494 SLC4A2P04920 1241 aa13.6□□□□□ -0.23
SP140-212ENST00000538494 TRHP20396 242 aaPredicted RBP13.57□□□□□ -0.24
SP140-212ENST00000538494 ABCB7O75027 752 aa13.5□□□□□ -0.25
SP140-212ENST00000538494 APLP2Q06481 763 aa13.49□□□□□ -0.25
SP140-212ENST00000538494 ZNF219Q9P2Y4 722 aaPredicted RBP13.46□□□□□ -0.25
SP140-212ENST00000538494 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.41□□□□□ -0.26
SP140-212ENST00000538494 HNRNPUL2Q1KMD3 747 aaKnown RBP13.41□□□□□ -0.26
SP140-212ENST00000538494 SAMD1Q6SPF0 538 aaPredicted RBP13.32□□□□□ -0.28
SP140-212ENST00000538494 CCDC180Q9P1Z9 1646 aa13.23□□□□□ -0.29
SP140-212ENST00000538494 RBM42Q9BTD8 480 aaKnown RBP13.16□□□□□ -0.3
SP140-212ENST00000538494 POLA2Q14181 598 aa13.11□□□□□ -0.31
SP140-212ENST00000538494 MYCNP04198 464 aaPredicted RBP13.09□□□□□ -0.31
SP140-212ENST00000538494 DNAJC5Q9H3Z4 198 aa13.05□□□□□ -0.32
SP140-212ENST00000538494 CHRDL2Q6WN34 429 aa13.01□□□□□ -0.33
SP140-212ENST00000538494 RB1CC1Q8TDY2 1594 aa12.9□□□□□ -0.35
SP140-212ENST00000538494 ATF5Q9Y2D1 282 aaPredicted RBP12.85□□□□□ -0.35
SP140-212ENST00000538494 SLC4A1APQ9BWU0 796 aaKnown RBP12.82□□□□□ -0.36
SP140-212ENST00000538494 AKT1S1Q96B36 256 aa12.8□□□□□ -0.36
SP140-212ENST00000538494 FOXD4L1Q9NU39 408 aa12.8□□□□□ -0.36
SP140-212ENST00000538494 ZBTB12Q9Y330 459 aaPredicted RBP12.76□□□□□ -0.37
SP140-212ENST00000538494 PABPN1Q86U42 306 aaKnown RBP eCLIP12.74□□□□□ -0.37
SP140-212ENST00000538494 REM2Q8IYK8 340 aaPredicted RBP12.7□□□□□ -0.38
SP140-212ENST00000538494 NACADO15069 1562 aa12.69□□□□□ -0.38
SP140-212ENST00000538494 OSCARQ8IYS5 282 aa12.69□□□□□ -0.38
SP140-212ENST00000538494 SP7Q8TDD2 431 aaPredicted RBP12.67□□□□□ -0.38
SP140-212ENST00000538494 PIP4P2Q8N4L2 257 aa12.63□□□□□ -0.39
SP140-212ENST00000538494 BICRAQ9NZM4 1560 aa12.6□□□□□ -0.39
SP140-212ENST00000538494 UNC13AQ9UPW8 1703 aa12.59□□□□□ -0.39
SP140-212ENST00000538494 PITPNM1O00562 1244 aa12.56□□□□□ -0.4
SP140-212ENST00000538494 HAX1O00165 279 aa12.54□□□□□ -0.4
SP140-212ENST00000538494 CECR2Q9BXF3 1484 aa12.53□□□□□ -0.4
SP140-212ENST00000538494 ZBTB22O15209 634 aa12.51□□□□□ -0.41
SP140-212ENST00000538494 FXR2P51116 673 aaKnown RBP eCLIP12.49□□□□□ -0.41
SP140-212ENST00000538494 CC2D2AQ9P2K1 1620 aa12.47□□□□□ -0.41
SP140-212ENST00000538494 SHROOM4Q9ULL8 1493 aa12.42□□□□□ -0.42
SP140-212ENST00000538494 MYO15BQ96JP2 1530 aa12.42□□□□□ -0.42
SP140-212ENST00000538494 ATXN8OSP0DMR3 200 aa12.41□□□□□ -0.42
SP140-212ENST00000538494 SPDYE2BA6NHP3 402 aa12.36□□□□□ -0.43
SP140-212ENST00000538494 SPDYE6P0CI01 402 aa12.36□□□□□ -0.43
SP140-212ENST00000538494 FBLN2P98095 1184 aa12.36□□□□□ -0.43
SP140-212ENST00000538494 SPDYE2Q495Y8 402 aa12.36□□□□□ -0.43
SP140-212ENST00000538494 EVX2Q03828 476 aa12.34□□□□□ -0.43
SP140-212ENST00000538494 EIF4G1Q04637 1599 aaKnown RBP12.3□□□□□ -0.44
SP140-212ENST00000538494 DCAF8L2P0C7V8 631 aa12.29□□□□□ -0.44
SP140-212ENST00000538494 CLEC11AQ9Y240 323 aa12.29□□□□□ -0.44
SP140-212ENST00000538494 CUX2O14529 1486 aa12.26□□□□□ -0.45
SP140-212ENST00000538494 PRKAR2AP13861 404 aaKnown RBP12.25□□□□□ -0.45
SP140-212ENST00000538494 SPDYE1Q8NFV5 336 aaPredicted RBP12.23□□□□□ -0.45
SP140-212ENST00000538494 MKRN4PQ13434 485 aaPredicted RBP12.22□□□□□ -0.45
SP140-212ENST00000538494 ZNF692Q9BU19 519 aaPredicted RBP12.21□□□□□ -0.45
SP140-212ENST00000538494 SSUH2Q9Y2M2 353 aa12.14□□□□□ -0.47
SP140-212ENST00000538494 C19orf67A6NJJ6 358 aa12.1□□□□□ -0.47
SP140-212ENST00000538494 CHADLQ6NUI6 762 aa12.08□□□□□ -0.48
SP140-212ENST00000538494 GABBR2O75899 941 aa12.03□□□□□ -0.48
SP140-212ENST00000538494 PRR29P0C7W0 189 aa12.02□□□□□ -0.49
SP140-212ENST00000538494 DCAF1Q9Y4B6 1507 aa11.98□□□□□ -0.49
SP140-212ENST00000538494 TRIM41Q8WV44 630 aa11.98□□□□□ -0.49
SP140-212ENST00000538494 SCRIBQ14160 1630 aa11.94□□□□□ -0.5
SP140-212ENST00000538494 ERCC6Q03468 1493 aa11.91□□□□□ -0.5
SP140-212ENST00000538494 LHX8Q68G74 356 aa11.91□□□□□ -0.5
SP140-212ENST00000538494 CD44P16070 742 aaKnown RBP11.84□□□□□ -0.51
SP140-212ENST00000538494 FARP1Q9Y4F1 1045 aaPredicted RBP11.83□□□□□ -0.52
SP140-212ENST00000538494 ZCCHC6Q5VYS8 1495 aaKnown RBP11.83□□□□□ -0.52
SP140-212ENST00000538494 NCAPD3P42695 1498 aa11.79□□□□□ -0.52
SP140-212ENST00000538494 POTEIP0CG38 1075 aa11.77□□□□□ -0.53
SP140-212ENST00000538494 THOC2Q8NI27 1593 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms