RNA–Protein interactions for RNA: ENST00000536337.5

PTPN21-202, Transcript of protein tyrosine phosphatase, non-receptor type 21, humanhuman

TSL 1 (best)

Gene PTPN21, Length 3,943 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN21-202ENST00000536337 NISCHQ9Y2I1 1504 aa24.14■■□□□ 1.46
PTPN21-202ENST00000536337 DCAF8L2P0C7V8 631 aa22.63■■□□□ 1.21
PTPN21-202ENST00000536337 SHROOM4Q9ULL8 1493 aa22.43■■□□□ 1.18
PTPN21-202ENST00000536337 SUPT5HO00267 1087 aaKnown RBP22.4■■□□□ 1.18
PTPN21-202ENST00000536337 EHMT2Q96KQ7 1210 aa21.29■■□□□ 1
PTPN21-202ENST00000536337 PCGF6Q9BYE7 350 aa21.22■□□□□ 0.99
PTPN21-202ENST00000536337 FAM9AQ8IZU1 332 aaPredicted RBP20.96■□□□□ 0.95
PTPN21-202ENST00000536337 CHIC1Q5VXU3 224 aa20.88■□□□□ 0.93
PTPN21-202ENST00000536337 LOC105371045A0A1W2PR82 267 aa20.79■□□□□ 0.92
PTPN21-202ENST00000536337 HRCP23327 699 aa20.61■□□□□ 0.89
PTPN21-202ENST00000536337 PPARGC1BQ86YN6 1023 aaKnown RBP20.59■□□□□ 0.89
PTPN21-202ENST00000536337 TRIM41Q8WV44 630 aa20.57■□□□□ 0.88
PTPN21-202ENST00000536337 TTBK1Q5TCY1 1321 aaPredicted RBP20.54■□□□□ 0.88
PTPN21-202ENST00000536337 TRIM26Q12899 539 aaPredicted RBP20.26■□□□□ 0.83
PTPN21-202ENST00000536337 ZCCHC6Q5VYS8 1495 aaKnown RBP20.2■□□□□ 0.82
PTPN21-202ENST00000536337 MYO15BQ96JP2 1530 aa20.16■□□□□ 0.82
PTPN21-202ENST00000536337 RANGAP1P46060 587 aaPredicted RBP20.08■□□□□ 0.8
PTPN21-202ENST00000536337 CCER1Q8TC90 406 aaPredicted RBP20.08■□□□□ 0.8
PTPN21-202ENST00000536337 ZEB1P37275 1124 aaPredicted RBP20.01■□□□□ 0.79
PTPN21-202ENST00000536337 UBTFP17480 764 aaKnown RBP19.93■□□□□ 0.78
PTPN21-202ENST00000536337 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.84■□□□□ 0.77
PTPN21-202ENST00000536337 ABCC9O60706 1549 aa19.82■□□□□ 0.76
PTPN21-202ENST00000536337 APLP2Q06481 763 aa19.8■□□□□ 0.76
PTPN21-202ENST00000536337 CCDC180Q9P1Z9 1646 aa19.71■□□□□ 0.75
PTPN21-202ENST00000536337 YTHDC1Q96MU7 727 aaKnown RBP19.67■□□□□ 0.74
PTPN21-202ENST00000536337 SCRIBQ14160 1630 aa19.61■□□□□ 0.73
PTPN21-202ENST00000536337 DCAF1Q9Y4B6 1507 aa19.57■□□□□ 0.72
PTPN21-202ENST00000536337 HNRNPUL2Q1KMD3 747 aaKnown RBP19.57■□□□□ 0.72
PTPN21-202ENST00000536337 PABPN1Q86U42 306 aaKnown RBP eCLIP19.57■□□□□ 0.72
PTPN21-202ENST00000536337 CENPBP07199 599 aaPredicted RBP19.54■□□□□ 0.72
PTPN21-202ENST00000536337 RSF1Q96T23 1441 aaPredicted RBP19.45■□□□□ 0.7
PTPN21-202ENST00000536337 DIEXFQ68CQ4 756 aaKnown RBP19.41■□□□□ 0.7
PTPN21-202ENST00000536337 ATP1B4Q9UN42 357 aaPredicted RBP19.37■□□□□ 0.69
PTPN21-202ENST00000536337 ITGAEP38570 1179 aa19.33■□□□□ 0.69
PTPN21-202ENST00000536337 PELP1Q8IZL8 1130 aaKnown RBP19.21■□□□□ 0.67
PTPN21-202ENST00000536337 CSRNP3Q8WYN3 585 aa19.21■□□□□ 0.67
PTPN21-202ENST00000536337 CECR2Q9BXF3 1484 aa19.19■□□□□ 0.66
PTPN21-202ENST00000536337 GTF3C3Q9Y5Q9 886 aa19.19■□□□□ 0.66
PTPN21-202ENST00000536337 SCAF1Q9H7N4 1312 aaKnown RBP19.13■□□□□ 0.65
PTPN21-202ENST00000536337 RB1CC1Q8TDY2 1594 aa19.08■□□□□ 0.64
PTPN21-202ENST00000536337 ACIN1Q9UKV3 1341 aaKnown RBP19.06■□□□□ 0.64
PTPN21-202ENST00000536337 NEUROD1Q13562 356 aa19.06■□□□□ 0.64
PTPN21-202ENST00000536337 ZNF316A6NFI3 1004 aaPredicted RBP19.02■□□□□ 0.63
PTPN21-202ENST00000536337 MROH2BQ7Z745 1585 aa18.93■□□□□ 0.62
PTPN21-202ENST00000536337 CEP162Q5TB80 1403 aa18.84■□□□□ 0.61
PTPN21-202ENST00000536337 SOGA1O94964 1423 aa18.81■□□□□ 0.6
PTPN21-202ENST00000536337 FAM50AQ14320 339 aaKnown RBP18.8■□□□□ 0.6
PTPN21-202ENST00000536337 P3H3Q8IVL6 736 aa18.79■□□□□ 0.6
PTPN21-202ENST00000536337 MIER1Q8N108 512 aa18.79■□□□□ 0.6
PTPN21-202ENST00000536337 NACADO15069 1562 aa18.75■□□□□ 0.59
PTPN21-202ENST00000536337 ABCC8Q09428 1581 aa18.75■□□□□ 0.59
PTPN21-202ENST00000536337 WIZO95785 1651 aa18.73■□□□□ 0.59
PTPN21-202ENST00000536337 CCDC88BA6NC98 1476 aa18.73■□□□□ 0.59
PTPN21-202ENST00000536337 CNGB1Q14028 1251 aaPredicted RBP18.67■□□□□ 0.58
PTPN21-202ENST00000536337 BCANQ96GW7 911 aa18.67■□□□□ 0.58
PTPN21-202ENST00000536337 CLIP1P30622 1438 aa18.65■□□□□ 0.58
PTPN21-202ENST00000536337 TNIKQ9UKE5 1360 aa18.64■□□□□ 0.57
PTPN21-202ENST00000536337 NEFLP07196 543 aa18.63■□□□□ 0.57
PTPN21-202ENST00000536337 WRNQ14191 1432 aaPredicted RBP eCLIP18.62■□□□□ 0.57
PTPN21-202ENST00000536337 BAZ1AQ9NRL2 1556 aaPredicted RBP18.61■□□□□ 0.57
PTPN21-202ENST00000536337 RUSC2Q8N2Y8 1516 aa18.55■□□□□ 0.56
PTPN21-202ENST00000536337 GOLGA3Q08378 1498 aa18.55■□□□□ 0.56
PTPN21-202ENST00000536337 HIRIP3Q9BW71 556 aaPredicted RBP18.52■□□□□ 0.55
PTPN21-202ENST00000536337 POLR3GLQ9BT43 218 aa18.51■□□□□ 0.55
PTPN21-202ENST00000536337 ARID3CA6NKF2 412 aa18.49■□□□□ 0.55
PTPN21-202ENST00000536337 EEA1Q15075 1411 aa18.47■□□□□ 0.55
PTPN21-202ENST00000536337 DDX10Q13206 875 aaKnown RBP18.47■□□□□ 0.55
PTPN21-202ENST00000536337 TRIM52Q96A61 297 aa18.41■□□□□ 0.54
PTPN21-202ENST00000536337 KANK4Q5T7N3 995 aaPredicted RBP18.4■□□□□ 0.54
PTPN21-202ENST00000536337 CEP164Q9UPV0 1460 aa18.38■□□□□ 0.53
PTPN21-202ENST00000536337 ERICH6Q7L0X2 663 aa18.36■□□□□ 0.53
PTPN21-202ENST00000536337 BAZ1BQ9UIG0 1483 aaKnown RBP18.36■□□□□ 0.53
PTPN21-202ENST00000536337 MYT1Q01538 1121 aa18.32■□□□□ 0.52
PTPN21-202ENST00000536337 ANP32CO43423 234 aa18.32■□□□□ 0.52
PTPN21-202ENST00000536337 TOP2AP11388 1531 aaKnown RBP18.31■□□□□ 0.52
PTPN21-202ENST00000536337 SIN3AQ96ST3 1273 aa18.29■□□□□ 0.52
PTPN21-202ENST00000536337 FKBP8Q14318 412 aa18.28■□□□□ 0.52
PTPN21-202ENST00000536337 VPS8Q8N3P4 1428 aa18.24■□□□□ 0.51
PTPN21-202ENST00000536337 CHIC2Q9UKJ5 165 aa18.24■□□□□ 0.51
PTPN21-202ENST00000536337 RAPGEF2Q9Y4G8 1499 aa18.22■□□□□ 0.51
PTPN21-202ENST00000536337 ZNF326Q5BKZ1 582 aaKnown RBP18.22■□□□□ 0.51
PTPN21-202ENST00000536337 SMARCA4P51532 1647 aa18.21■□□□□ 0.5
PTPN21-202ENST00000536337 SMARCA2P51531 1590 aa18.17■□□□□ 0.5
PTPN21-202ENST00000536337 KIF27Q86VH2 1401 aa18.15■□□□□ 0.5
PTPN21-202ENST00000536337 TONSLQ96HA7 1378 aa18.13■□□□□ 0.49
PTPN21-202ENST00000536337 IRX6P78412 446 aaPredicted RBP18.1■□□□□ 0.49
PTPN21-202ENST00000536337 FBLN2P98095 1184 aa18.1■□□□□ 0.49
PTPN21-202ENST00000536337 KCNH8Q96L42 1107 aa18.1■□□□□ 0.49
PTPN21-202ENST00000536337 CCNB3Q8WWL7 1395 aa18.1■□□□□ 0.49
PTPN21-202ENST00000536337 HNRNPUQ00839 825 aaKnown RBP eCLIP18.09■□□□□ 0.49
PTPN21-202ENST00000536337 RRP7BPQ9NSQ0 103 aa18.08■□□□□ 0.49
PTPN21-202ENST00000536337 SUPT16HQ9Y5B9 1047 aaKnown RBP18.08■□□□□ 0.48
PTPN21-202ENST00000536337 ATAD2BQ9ULI0 1458 aa18.05■□□□□ 0.48
PTPN21-202ENST00000536337 ZNF777Q9ULD5 760 aaPredicted RBP18.04■□□□□ 0.48
PTPN21-202ENST00000536337 SENP3-EIF4A1A0A087X0R7 540 aa18.04■□□□□ 0.48
PTPN21-202ENST00000536337 MTUS2Q5JR59 1369 aa18.03■□□□□ 0.48
PTPN21-202ENST00000536337 FAM9BQ8IZU0 186 aa18.03■□□□□ 0.48
PTPN21-202ENST00000536337 CUX2O14529 1486 aa18.01■□□□□ 0.47
PTPN21-202ENST00000536337 CLSPNQ9HAW4 1339 aa18■□□□□ 0.47
PTPN21-202ENST00000536337 DHX57Q6P158 1386 aaKnown RBP17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms