RNA–Protein interactions for RNA: ENST00000532504.5

PPFIA1-222, Transcript of PTPRF interacting protein alpha 1, humanhuman

TSL 1 (best)

Gene PPFIA1, Length 5,159 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA1-222ENST00000532504 NISCHQ9Y2I1 1504 aa29.4■■■□□ 2.3
PPFIA1-222ENST00000532504 DCAF8L2P0C7V8 631 aa29.35■■■□□ 2.29
PPFIA1-222ENST00000532504 SHROOM4Q9ULL8 1493 aa27.28■■□□□ 1.96
PPFIA1-222ENST00000532504 SUPT5HO00267 1087 aaKnown RBP27.12■■□□□ 1.93
PPFIA1-222ENST00000532504 EHMT2Q96KQ7 1210 aa26.06■■□□□ 1.76
PPFIA1-222ENST00000532504 ABCC9O60706 1549 aa25.88■■□□□ 1.73
PPFIA1-222ENST00000532504 FAM9AQ8IZU1 332 aaPredicted RBP25.52■■□□□ 1.68
PPFIA1-222ENST00000532504 PABPN1Q86U42 306 aaKnown RBP eCLIP25.43■■□□□ 1.66
PPFIA1-222ENST00000532504 RANGAP1P46060 587 aaPredicted RBP25.2■■□□□ 1.62
PPFIA1-222ENST00000532504 TRIM41Q8WV44 630 aa25.14■■□□□ 1.61
PPFIA1-222ENST00000532504 APLP2Q06481 763 aa25.06■■□□□ 1.6
PPFIA1-222ENST00000532504 TTBK1Q5TCY1 1321 aaPredicted RBP24.94■■□□□ 1.58
PPFIA1-222ENST00000532504 ATP1B4Q9UN42 357 aaPredicted RBP24.84■■□□□ 1.57
PPFIA1-222ENST00000532504 UBTFP17480 764 aaKnown RBP24.77■■□□□ 1.56
PPFIA1-222ENST00000532504 CCDC180Q9P1Z9 1646 aa24.45■■□□□ 1.5
PPFIA1-222ENST00000532504 SCRIBQ14160 1630 aa24.37■■□□□ 1.49
PPFIA1-222ENST00000532504 ZCCHC6Q5VYS8 1495 aaKnown RBP24.29■■□□□ 1.48
PPFIA1-222ENST00000532504 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.23■■□□□ 1.47
PPFIA1-222ENST00000532504 HNRNPUL2Q1KMD3 747 aaKnown RBP24.23■■□□□ 1.47
PPFIA1-222ENST00000532504 PPARGC1BQ86YN6 1023 aaKnown RBP24.16■■□□□ 1.46
PPFIA1-222ENST00000532504 CHIC1Q5VXU3 224 aa24.12■■□□□ 1.45
PPFIA1-222ENST00000532504 PCGF6Q9BYE7 350 aa24.12■■□□□ 1.45
PPFIA1-222ENST00000532504 RB1CC1Q8TDY2 1594 aa24.06■■□□□ 1.44
PPFIA1-222ENST00000532504 FBLN2P98095 1184 aa24.06■■□□□ 1.44
PPFIA1-222ENST00000532504 LOC105371045A0A1W2PR82 267 aa24.02■■□□□ 1.44
PPFIA1-222ENST00000532504 MYT1LQ9UL68 1186 aa23.99■■□□□ 1.43
PPFIA1-222ENST00000532504 ITGAEP38570 1179 aa23.81■■□□□ 1.4
PPFIA1-222ENST00000532504 NACADO15069 1562 aa23.79■■□□□ 1.4
PPFIA1-222ENST00000532504 CCER1Q8TC90 406 aaPredicted RBP23.74■■□□□ 1.39
PPFIA1-222ENST00000532504 P3H3Q8IVL6 736 aa23.51■■□□□ 1.35
PPFIA1-222ENST00000532504 ARID3CA6NKF2 412 aa23.5■■□□□ 1.35
PPFIA1-222ENST00000532504 CSRNP3Q8WYN3 585 aa23.38■■□□□ 1.33
PPFIA1-222ENST00000532504 FAM50AQ14320 339 aaKnown RBP23.33■■□□□ 1.33
PPFIA1-222ENST00000532504 BAZ1BQ9UIG0 1483 aaKnown RBP23.3■■□□□ 1.32
PPFIA1-222ENST00000532504 RSF1Q96T23 1441 aaPredicted RBP23.3■■□□□ 1.32
PPFIA1-222ENST00000532504 TRIM26Q12899 539 aaPredicted RBP23.29■■□□□ 1.32
PPFIA1-222ENST00000532504 DCAF1Q9Y4B6 1507 aa23.23■■□□□ 1.31
PPFIA1-222ENST00000532504 CECR2Q9BXF3 1484 aa23.22■■□□□ 1.31
PPFIA1-222ENST00000532504 ZEB1P37275 1124 aaPredicted RBP23.18■■□□□ 1.3
PPFIA1-222ENST00000532504 CHMP7Q8WUX9 453 aaPredicted RBP23.17■■□□□ 1.3
PPFIA1-222ENST00000532504 ERCC6Q03468 1493 aa23.12■■□□□ 1.29
PPFIA1-222ENST00000532504 POLR3GLQ9BT43 218 aa23.09■■□□□ 1.29
PPFIA1-222ENST00000532504 TRIM52Q96A61 297 aa23.07■■□□□ 1.28
PPFIA1-222ENST00000532504 NPM1P06748 294 aaKnown RBP eCLIP23.05■■□□□ 1.28
PPFIA1-222ENST00000532504 BAZ1AQ9NRL2 1556 aaPredicted RBP23.05■■□□□ 1.28
PPFIA1-222ENST00000532504 ZNF777Q9ULD5 760 aaPredicted RBP23.05■■□□□ 1.28
PPFIA1-222ENST00000532504 CDK11AQ9UQ88 783 aaPredicted RBP22.94■■□□□ 1.26
PPFIA1-222ENST00000532504 CNGB1Q14028 1251 aaPredicted RBP22.89■■□□□ 1.26
PPFIA1-222ENST00000532504 MROH2BQ7Z745 1585 aa22.83■■□□□ 1.25
PPFIA1-222ENST00000532504 WRNQ14191 1432 aaPredicted RBP eCLIP22.83■■□□□ 1.25
PPFIA1-222ENST00000532504 SLC4A1APQ9BWU0 796 aaKnown RBP22.81■■□□□ 1.24
PPFIA1-222ENST00000532504 PLPPR3Q6T4P5 718 aa22.8■■□□□ 1.24
PPFIA1-222ENST00000532504 NEUROD1Q13562 356 aa22.78■■□□□ 1.24
PPFIA1-222ENST00000532504 MYO15BQ96JP2 1530 aa22.76■■□□□ 1.23
PPFIA1-222ENST00000532504 ZNF326Q5BKZ1 582 aaKnown RBP22.72■■□□□ 1.23
PPFIA1-222ENST00000532504 SMARCA2P51531 1590 aa22.69■■□□□ 1.22
PPFIA1-222ENST00000532504 ESF1Q9H501 851 aaKnown RBP22.68■■□□□ 1.22
PPFIA1-222ENST00000532504 KCNH8Q96L42 1107 aa22.67■■□□□ 1.22
PPFIA1-222ENST00000532504 BCANQ96GW7 911 aa22.66■■□□□ 1.22
PPFIA1-222ENST00000532504 YTHDC1Q96MU7 727 aaKnown RBP22.66■■□□□ 1.22
PPFIA1-222ENST00000532504 KIF27Q86VH2 1401 aa22.61■■□□□ 1.21
PPFIA1-222ENST00000532504 PDS5BQ9NTI5 1447 aa22.61■■□□□ 1.21
PPFIA1-222ENST00000532504 CCDC88BA6NC98 1476 aa22.6■■□□□ 1.21
PPFIA1-222ENST00000532504 PELP1Q8IZL8 1130 aaKnown RBP22.59■■□□□ 1.21
PPFIA1-222ENST00000532504 CHIC2Q9UKJ5 165 aa22.54■■□□□ 1.2
PPFIA1-222ENST00000532504 ATAD2BQ9ULI0 1458 aa22.52■■□□□ 1.19
PPFIA1-222ENST00000532504 MTUS2Q5JR59 1369 aa22.5■■□□□ 1.19
PPFIA1-222ENST00000532504 CLIP1P30622 1438 aa22.48■■□□□ 1.19
PPFIA1-222ENST00000532504 CUX2O14529 1486 aa22.48■■□□□ 1.19
PPFIA1-222ENST00000532504 WIZO95785 1651 aa22.47■■□□□ 1.19
PPFIA1-222ENST00000532504 CENPBP07199 599 aaPredicted RBP22.47■■□□□ 1.19
PPFIA1-222ENST00000532504 CHGAP10645 457 aaKnown RBP22.47■■□□□ 1.19
PPFIA1-222ENST00000532504 CADPSQ9ULU8 1353 aa22.47■■□□□ 1.19
PPFIA1-222ENST00000532504 HRCP23327 699 aa22.46■■□□□ 1.19
PPFIA1-222ENST00000532504 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.46■■□□□ 1.194e-7■■□□□ 14.4
PPFIA1-222ENST00000532504 PLEKHD1A6NEE1 506 aa22.46■■□□□ 1.19
PPFIA1-222ENST00000532504 TDRD9Q8NDG6 1382 aaKnown RBP22.45■■□□□ 1.18
PPFIA1-222ENST00000532504 STAG3Q9UJ98 1225 aa22.43■■□□□ 1.18
PPFIA1-222ENST00000532504 TSPY4P0CV99 314 aa22.41■■□□□ 1.18
PPFIA1-222ENST00000532504 TSPY10P0CW01 314 aa22.41■■□□□ 1.18
PPFIA1-222ENST00000532504 EEA1Q15075 1411 aa22.4■■□□□ 1.18
PPFIA1-222ENST00000532504 TRHP20396 242 aaPredicted RBP22.38■■□□□ 1.17
PPFIA1-222ENST00000532504 SOGA1O94964 1423 aa22.37■■□□□ 1.17
PPFIA1-222ENST00000532504 GOLGA3Q08378 1498 aa22.37■■□□□ 1.17
PPFIA1-222ENST00000532504 CARMIL1Q5VZK9 1371 aa22.36■■□□□ 1.17
PPFIA1-222ENST00000532504 SMARCA4P51532 1647 aa22.35■■□□□ 1.17
PPFIA1-222ENST00000532504 TOP2AP11388 1531 aaKnown RBP22.33■■□□□ 1.17
PPFIA1-222ENST00000532504 EIF4G1Q04637 1599 aaKnown RBP22.33■■□□□ 1.16
PPFIA1-222ENST00000532504 ABCC8Q09428 1581 aa22.32■■□□□ 1.16
PPFIA1-222ENST00000532504 CEP162Q5TB80 1403 aa22.25■■□□□ 1.15
PPFIA1-222ENST00000532504 CEP164Q9UPV0 1460 aa22.25■■□□□ 1.15
PPFIA1-222ENST00000532504 NEFLP07196 543 aa22.24■■□□□ 1.15
PPFIA1-222ENST00000532504 ARID4BQ4LE39 1312 aaPredicted RBP22.24■■□□□ 1.15
PPFIA1-222ENST00000532504 SENP3Q9H4L4 574 aaPredicted RBP22.21■■□□□ 1.15
PPFIA1-222ENST00000532504 RRP7BPQ9NSQ0 103 aa22.2■■□□□ 1.14
PPFIA1-222ENST00000532504 CFDP1Q9UEE9 299 aaPredicted RBP22.2■■□□□ 1.14
PPFIA1-222ENST00000532504 FANCD2Q9BXW9 1451 aa22.17■■□□□ 1.14
PPFIA1-222ENST00000532504 TNIKQ9UKE5 1360 aa22.12■■□□□ 1.13
PPFIA1-222ENST00000532504 DNAJC5BQ9UF47 199 aa22.08■■□□□ 1.12
PPFIA1-222ENST00000532504 NCAPD3P42695 1498 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms