RNA–Protein interactions for RNA: ENST00000532313.5

CSRP1-215, Transcript of cysteine and glycine rich protein 1, humanhuman

TSL 1 (best)

Gene CSRP1, Length 5,239 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSRP1-215ENST00000532313 NISCHQ9Y2I1 1504 aa21.79■■□□□ 1.08
CSRP1-215ENST00000532313 DCAF8L2P0C7V8 631 aa21.4■■□□□ 1.02
CSRP1-215ENST00000532313 SHROOM4Q9ULL8 1493 aa19.44■□□□□ 0.7
CSRP1-215ENST00000532313 SUPT5HO00267 1087 aaKnown RBP19.4■□□□□ 0.7
CSRP1-215ENST00000532313 FAM9AQ8IZU1 332 aaPredicted RBP19.33■□□□□ 0.68
CSRP1-215ENST00000532313 ABCC9O60706 1549 aa19.16■□□□□ 0.66
CSRP1-215ENST00000532313 APLP2Q06481 763 aa18.66■□□□□ 0.58
CSRP1-215ENST00000532313 PABPN1Q86U42 306 aaKnown RBP eCLIP18.58■□□□□ 0.57
CSRP1-215ENST00000532313 CCDC180Q9P1Z9 1646 aa18.58■□□□□ 0.56
CSRP1-215ENST00000532313 TRIM41Q8WV44 630 aa18.34■□□□□ 0.53
CSRP1-215ENST00000532313 RB1CC1Q8TDY2 1594 aa18.28■□□□□ 0.52
CSRP1-215ENST00000532313 EHMT2Q96KQ7 1210 aa18.26■□□□□ 0.51
CSRP1-215ENST00000532313 ATP1B4Q9UN42 357 aaPredicted RBP18.12■□□□□ 0.49
CSRP1-215ENST00000532313 UBTFP17480 764 aaKnown RBP18.09■□□□□ 0.49
CSRP1-215ENST00000532313 NACADO15069 1562 aa18.09■□□□□ 0.49
CSRP1-215ENST00000532313 SCRIBQ14160 1630 aa18.02■□□□□ 0.47
CSRP1-215ENST00000532313 RANGAP1P46060 587 aaPredicted RBP17.99■□□□□ 0.47
CSRP1-215ENST00000532313 ZCCHC6Q5VYS8 1495 aaKnown RBP17.98■□□□□ 0.47
CSRP1-215ENST00000532313 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.89■□□□□ 0.45
CSRP1-215ENST00000532313 HNRNPUL2Q1KMD3 747 aaKnown RBP17.89■□□□□ 0.45
CSRP1-215ENST00000532313 MYT1LQ9UL68 1186 aa17.84■□□□□ 0.45
CSRP1-215ENST00000532313 FBLN2P98095 1184 aa17.75■□□□□ 0.43
CSRP1-215ENST00000532313 TTBK1Q5TCY1 1321 aaPredicted RBP17.75■□□□□ 0.43
CSRP1-215ENST00000532313 DCAF1Q9Y4B6 1507 aa17.59■□□□□ 0.41
CSRP1-215ENST00000532313 NPM1P06748 294 aaKnown RBP eCLIP17.54■□□□□ 0.4
CSRP1-215ENST00000532313 ERCC6Q03468 1493 aa17.47■□□□□ 0.39
CSRP1-215ENST00000532313 MYO15BQ96JP2 1530 aa17.43■□□□□ 0.38
CSRP1-215ENST00000532313 BAZ1BQ9UIG0 1483 aaKnown RBP17.42■□□□□ 0.38
CSRP1-215ENST00000532313 CDK11AQ9UQ88 783 aaPredicted RBP17.34■□□□□ 0.37
CSRP1-215ENST00000532313 CHMP7Q8WUX9 453 aaPredicted RBP17.32■□□□□ 0.36
CSRP1-215ENST00000532313 BAZ1AQ9NRL2 1556 aaPredicted RBP17.28■□□□□ 0.36
CSRP1-215ENST00000532313 CHIC1Q5VXU3 224 aa17.23■□□□□ 0.35
CSRP1-215ENST00000532313 ESF1Q9H501 851 aaKnown RBP17.21■□□□□ 0.34
CSRP1-215ENST00000532313 SMARCA2P51531 1590 aa17.18■□□□□ 0.34
CSRP1-215ENST00000532313 PDS5BQ9NTI5 1447 aa17.17■□□□□ 0.34
CSRP1-215ENST00000532313 CSRNP3Q8WYN3 585 aa17.15■□□□□ 0.34
CSRP1-215ENST00000532313 CECR2Q9BXF3 1484 aa17.13■□□□□ 0.33
CSRP1-215ENST00000532313 PCGF6Q9BYE7 350 aa17.09■□□□□ 0.33
CSRP1-215ENST00000532313 CCER1Q8TC90 406 aaPredicted RBP17.08■□□□□ 0.32
CSRP1-215ENST00000532313 ZEB1P37275 1124 aaPredicted RBP17.07■□□□□ 0.32
CSRP1-215ENST00000532313 ITGAEP38570 1179 aa17.07■□□□□ 0.32
CSRP1-215ENST00000532313 RSF1Q96T23 1441 aaPredicted RBP17.02■□□□□ 0.32
CSRP1-215ENST00000532313 FAM50AQ14320 339 aaKnown RBP16.99■□□□□ 0.31
CSRP1-215ENST00000532313 P3H3Q8IVL6 736 aa16.94■□□□□ 0.3
CSRP1-215ENST00000532313 TRIM52Q96A61 297 aa16.89■□□□□ 0.29
CSRP1-215ENST00000532313 KIF27Q86VH2 1401 aa16.87■□□□□ 0.29
CSRP1-215ENST00000532313 PELP1Q8IZL8 1130 aaKnown RBP16.86■□□□□ 0.29
CSRP1-215ENST00000532313 WRNQ14191 1432 aaPredicted RBP eCLIP16.86■□□□□ 0.29
CSRP1-215ENST00000532313 EEA1Q15075 1411 aa16.86■□□□□ 0.29
CSRP1-215ENST00000532313 BCANQ96GW7 911 aa16.85■□□□□ 0.29
CSRP1-215ENST00000532313 ZNF777Q9ULD5 760 aaPredicted RBP16.85■□□□□ 0.29
CSRP1-215ENST00000532313 ARID3CA6NKF2 412 aa16.85■□□□□ 0.29
CSRP1-215ENST00000532313 CADPSQ9ULU8 1353 aa16.82■□□□□ 0.28
CSRP1-215ENST00000532313 LOC105371045A0A1W2PR82 267 aa16.81■□□□□ 0.28
CSRP1-215ENST00000532313 PPARGC1BQ86YN6 1023 aaKnown RBP16.81■□□□□ 0.28
CSRP1-215ENST00000532313 TRHP20396 242 aaPredicted RBP16.8■□□□□ 0.28
CSRP1-215ENST00000532313 TRIM26Q12899 539 aaPredicted RBP16.79■□□□□ 0.28
CSRP1-215ENST00000532313 PLEKHD1A6NEE1 506 aa16.79■□□□□ 0.28
CSRP1-215ENST00000532313 STAG3Q9UJ98 1225 aa16.78■□□□□ 0.28
CSRP1-215ENST00000532313 ATAD2BQ9ULI0 1458 aa16.74■□□□□ 0.27
CSRP1-215ENST00000532313 ABCC8Q09428 1581 aa16.73■□□□□ 0.27
CSRP1-215ENST00000532313 CEP164Q9UPV0 1460 aa16.73■□□□□ 0.27
CSRP1-215ENST00000532313 TSPY4P0CV99 314 aa16.72■□□□□ 0.27
CSRP1-215ENST00000532313 TSPY10P0CW01 314 aa16.72■□□□□ 0.27
CSRP1-215ENST00000532313 SLC4A1APQ9BWU0 796 aaKnown RBP16.72■□□□□ 0.27
CSRP1-215ENST00000532313 CARMIL2Q6F5E8 1435 aa16.67■□□□□ 0.26
CSRP1-215ENST00000532313 ACIN1Q9UKV3 1341 aaKnown RBP16.65■□□□□ 0.26
CSRP1-215ENST00000532313 POLR3GLQ9BT43 218 aa16.65■□□□□ 0.26
CSRP1-215ENST00000532313 MROH2BQ7Z745 1585 aa16.64■□□□□ 0.26
CSRP1-215ENST00000532313 MTUS2Q5JR59 1369 aa16.64■□□□□ 0.26
CSRP1-215ENST00000532313 KCNH8Q96L42 1107 aa16.64■□□□□ 0.25
CSRP1-215ENST00000532313 SOGA1O94964 1423 aa16.64■□□□□ 0.25
CSRP1-215ENST00000532313 TOP2AP11388 1531 aaKnown RBP16.62■□□□□ 0.25
CSRP1-215ENST00000532313 ARID4BQ4LE39 1312 aaPredicted RBP16.62■□□□□ 0.25
CSRP1-215ENST00000532313 OSCARQ8IYS5 282 aa16.61■□□□□ 0.25
CSRP1-215ENST00000532313 EIF4G1Q04637 1599 aaKnown RBP16.6■□□□□ 0.25
CSRP1-215ENST00000532313 SMARCA4P51532 1647 aa16.6■□□□□ 0.25
CSRP1-215ENST00000532313 CUX2O14529 1486 aa16.6■□□□□ 0.25
CSRP1-215ENST00000532313 NCAPD3P42695 1498 aa16.6■□□□□ 0.25
CSRP1-215ENST00000532313 PLPPR3Q6T4P5 718 aa16.58■□□□□ 0.24
CSRP1-215ENST00000532313 CCDC88BA6NC98 1476 aa16.56■□□□□ 0.24
CSRP1-215ENST00000532313 CARMIL1Q5VZK9 1371 aa16.54■□□□□ 0.24
CSRP1-215ENST00000532313 GOLGA3Q08378 1498 aa16.53■□□□□ 0.24
CSRP1-215ENST00000532313 FANCD2Q9BXW9 1451 aa16.53■□□□□ 0.24
CSRP1-215ENST00000532313 CHGAP10645 457 aaKnown RBP16.52■□□□□ 0.23
CSRP1-215ENST00000532313 CLIP1P30622 1438 aa16.47■□□□□ 0.23
CSRP1-215ENST00000532313 TDRD9Q8NDG6 1382 aaKnown RBP16.45■□□□□ 0.22
CSRP1-215ENST00000532313 ZNF326Q5BKZ1 582 aaKnown RBP16.42■□□□□ 0.22
CSRP1-215ENST00000532313 CFDP1Q9UEE9 299 aaPredicted RBP16.42■□□□□ 0.22
CSRP1-215ENST00000532313 FHAD1B1AJZ9 1412 aa16.41■□□□□ 0.22
CSRP1-215ENST00000532313 CC2D2AQ9P2K1 1620 aa16.4■□□□□ 0.22
CSRP1-215ENST00000532313 PPP1R15AO75807 674 aaPredicted RBP16.4■□□□□ 0.22
CSRP1-215ENST00000532313 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.39■□□□□ 0.21
CSRP1-215ENST00000532313 NEFMP07197 916 aa16.39■□□□□ 0.21
CSRP1-215ENST00000532313 NEUROD1Q13562 356 aa16.35■□□□□ 0.21
CSRP1-215ENST00000532313 HDGFP51858 240 aaKnown RBP16.34■□□□□ 0.21
CSRP1-215ENST00000532313 CENPBP07199 599 aaPredicted RBP16.34■□□□□ 0.21
CSRP1-215ENST00000532313 WIZO95785 1651 aa16.33■□□□□ 0.2
CSRP1-215ENST00000532313 HMGXB3Q12766 1538 aa16.33■□□□□ 0.2
CSRP1-215ENST00000532313 NEFLP07196 543 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms